entropart-package | Entropy partitioning to measure diversity |
AllenH | Phylogenetic Entropy of a Community |
AlphaDiversity | Unbiased alpha diversity of a metacommunity |
AlphaEntropy | Unbiased alpha entropy of a metacommunity |
as.SimTest | SimTest class |
bcDiversity | Generalized diversity of a community |
bcPhyloBetaEntropy | Phylogenetic Beta Entropy of a community |
bcPhyloDiversity | Phylogenetic Diversity of a Community |
bcPhyloEntropy | Phylogenetic Entropy of a community |
bcShannon | Shannon entropy of a community |
bcShannonBeta | Shannon beta entropy of a community |
bcSimpson | Simpson entropy of a community |
bcSimpsonBeta | Simpson beta entropy of a community |
bcTsallis | Tsallis Entropy of a community |
bcTsallisBeta | Tsallis beta entropy of a community |
BetaDiversity | Unbiased beta diversity of a metacommunity |
BetaEntropy | Unbiased beta entropy of a metacommunity |
ChaoPD | Phylogenetic Diversity of a Community |
CommunityProfile | Diversity or Entropy Profile of a community |
Coverage | Sample coverage of a community |
Diversity | Generalized diversity of a community |
DivEst | Diversity Estimation of a metacommunity |
DivPart | Diversity Partition of a metacommunity |
DivProfile | Diversity Profile of a metacommunity |
Dqz | Similarity-based diversity of a community |
EightSpAbundance | Abundances of 8 species to run examples. |
EightSpTree | Functional tree with 8 species. |
Enq | Grassberger's expectation of n^q |
entropart | Entropy partitioning to measure diversity |
EntropyCI | Entropy of Monte-Carlo simulated communities |
expq | Exponential of order q |
GammaDiversity | Unbiased gamma diversity of a metacommunity |
GammaEntropy | Unbiased gamma entropy of a metacommunity |
Hqz | Similarity-based entropy of a community |
is.MCdiversity | Meta-Community diversity class. |
is.MCentropy | Meta-Community entropy class. |
is.MetaCommunity | Metacommunity class |
is.PhyloDiversity | Phylogenetic Diversity of a Community |
is.PhyloEntropy | Phylogenetic Entropy of a community |
is.PPtree | Preprocessed Trees. |
is.SimTest | SimTest class |
KLq | Generalized Kullback-Leibler divergence |
lnq | Logarithm of order q |
MCdiversity | Meta-Community diversity class. |
MCentropy | Meta-Community entropy class. |
MergeC | Manipulation of meta-communities |
MergeMC | Manipulation of meta-communities |
MetaCommunity | Metacommunity class |
Originality.Species | Originality of species |
Paracou618.dist | Functional distances between pairs of species of Paracou field station plots 6 and 18, two 1-ha plots inventoried by the Bridge project. |
Paracou618.Functional | Functional tree of species of Paracou field station plots 6 and 18, two 1-ha plots inventoried by the Bridge project. |
Paracou618.MC | Paracou field station plots 6 and 18, two 1-ha plots inventoried by the Bridge project. |
Paracou618.Taxonomy | Taxonomy (Family - Genus - Species) of Paracou field station plots 6 and 18, two 1-ha plots inventoried by the Bridge project. |
PDFD | Phylogenetic Diversity / Functional Diversity of a Community |
PhyloApply | Apply a Function over a Phylogenetic Tree |
PhyloBetaEntropy | Phylogenetic Beta Entropy of a community |
PhyloDiversity | Phylogenetic Diversity of a Community |
PhyloEntropy | Phylogenetic Entropy of a community |
plot.DivEst | Diversity Estimation of a metacommunity |
plot.DivPart | Diversity Partition of a metacommunity |
plot.DivProfile | Diversity Profile of a metacommunity |
plot.MCdiversity | Meta-Community diversity class. |
plot.MCentropy | Meta-Community entropy class. |
plot.MetaCommunity | Metacommunity class |
plot.PhyloValue | Plot phylogenetic entropy of diversity. |
plot.PPtree | Preprocessed Trees. |
plot.SimTest | SimTest class |
PPtree | Preprocessed Trees. |
Rao | Rao Quadratic Entropy of a Community |
Richness | Simpson entropy of a community |
Shannon | Shannon entropy of a community |
ShannonBeta | Shannon beta entropy of a community |
ShuffleMC | Manipulation of meta-communities |
Simpson | Simpson entropy of a community |
SimpsonBeta | Simpson beta entropy of a community |
SimTest | SimTest class |
summary.DivEst | Diversity Estimation of a metacommunity |
summary.DivPart | Diversity Partition of a metacommunity |
summary.DivProfile | Diversity Profile of a metacommunity |
summary.MCdiversity | Meta-Community diversity class. |
summary.MCentropy | Meta-Community entropy class. |
summary.MetaCommunity | Metacommunity class |
summary.PhyloDiversity | Phylogenetic Diversity of a Community |
summary.PhyloEntropy | Phylogenetic Entropy of a community |
summary.SimTest | SimTest class |
Tsallis | Tsallis Entropy of a community |
TsallisBeta | Tsallis beta entropy of a community |