Phasing and imputation of half-sib families using SNP data


[Up] [Top]

Documentation for package ‘hsphase’ version 1.2.4

Help Pages

hsphase-package Phasing, Sire Imputation and Recombination Events for Half-sib Families
aio All-in-one Phasing
bmh Block Partitioning
co Crossover Detection
cs Chromosome Splitter
genotypes Example Genotype Data Set
hbp Haplotype Blocks of Phased Data
hh Heatmap of Half-sibs
hsphase Phasing, Sire Imputation and Recombination Events for Half-sib Families
hss Half-sib Family Splitter
imageplot Image Plot of Blocking Structure
impute Impute of Low Density SNP Marker to High Density (Paternal Strand)
map Example Map File
ohd Opposing Homozygote Detection
ohg Matrix of Opposing Homozygotes
para Parallel Analysis of Data
pedigree Example Pedigree
pedigreeNaming Fix Pedigree Errors
phf Half-Sib Family Phasing
pm Probability Matrix
readGenotype Read and Check the Genotype File
recombinations Recombination Number
rplot Recombination Plot
rpoh Reconstruct Pedigree Based on Matrix of Opposing Homozygotes
ssp Sire Imputation and Phasing