Routines for fitting kinetic models with one or more state variables to chemical degradation data


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Documentation for package ‘mkin’ version 0.9-24

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backtransform_odeparms Functions to transform and backtransform kinetic parameters for fitting
DFOP.solution Dual First-Order in Parallel kinetics
endpoints Function to calculate endpoints for further use from kinetic models fitted with mkinfit
FOCUS_2006_A Datasets A to F from the FOCUS Kinetics report from 2006
FOCUS_2006_B Datasets A to F from the FOCUS Kinetics report from 2006
FOCUS_2006_C Datasets A to F from the FOCUS Kinetics report from 2006
FOCUS_2006_D Datasets A to F from the FOCUS Kinetics report from 2006
FOCUS_2006_DFOP_ref_A_to_B Results of fitting the DFOP model to Datasets A to B of FOCUS (2006)
FOCUS_2006_E Datasets A to F from the FOCUS Kinetics report from 2006
FOCUS_2006_F Datasets A to F from the FOCUS Kinetics report from 2006
FOCUS_2006_FOMC_ref_A_to_F Results of fitting the FOMC model to Datasets A to F of FOCUS (2006)
FOCUS_2006_HS_ref_A_to_F Results of fitting the HS model to Datasets A to F of FOCUS (2006)
FOCUS_2006_SFO_ref_A_to_F Results of fitting the SFO model to Datasets A to F of FOCUS (2006)
FOMC.solution First-Order Multi-Compartment kinetics
HS.solution Hockey-Stick kinetics
ilr Function to perform isotropic log-ratio transformation
invilr Function to perform isotropic log-ratio transformation
mkinerrmin Calculate the minimum error to assume in order to pass the variance test
mkinfit Fit a kinetic model to data with one or more state variables.
mkinmod Function to set up a kinetic model with one or more state variables.
mkinplot Plot the observed data and the fitted model of an mkinfit.
mkinpredict Produce predictions from a kinetic model using specifc parameters
mkinresplot Function to plot residuals stored in an mkin object
mkin_long_to_wide Convert a dataframe from long to wide format.
mkin_wide_to_long Convert a dataframe with observations over time into long format.
plot.mkinfit Plot the observed data and the fitted model of an mkinfit object.
print.summary.mkinfit Summary method for class "mkinfit".
schaefer07_complex_case Metabolism data set used for checking the software quality of KinGUI
schaefer07_complex_results Metabolism data set used for checking the software quality of KinGUI
SFO.solution Single First-Order kinetics
SFORB.solution Single First-Order Reversible Binding kinetics
summary.mkinfit Summary method for class "mkinfit".
transform_odeparms Functions to transform and backtransform kinetic parameters for fitting