A B C D E F G L M N O P R S T V W misc
pomp-package | Partially-observed Markov processes |
abc | The ABC algorithm |
abc-abc | The ABC algorithm |
abc-class | The ABC algorithm |
abc-method | The ABC algorithm |
abc-methods | Methods of the "abc" class |
abc-pomp | The ABC algorithm |
abc-probed.pomp | The ABC algorithm |
as-method | Methods of the "pfilterd.pomp" class |
as-method | Methods of the "pomp" class |
as-method | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
as.data.frame.pfilterd.pomp | Methods of the "pfilterd.pomp" class |
as.data.frame.pomp | Methods of the "pomp" class |
basic.probes | Some probes for partially-observed Markov processes |
bbs | SIR models. |
blowflies | Model for Nicholson's blowflies. |
blowflies1 | Model for Nicholson's blowflies. |
blowflies2 | Model for Nicholson's blowflies. |
bsmc | Liu and West Bayesian Particle Filter |
bsmc-method | Liu and West Bayesian Particle Filter |
bsmc-pomp | Liu and West Bayesian Particle Filter |
bspline.basis | B-spline bases |
coef-method | Methods of the "pomp" class |
coef-pomp | Methods of the "pomp" class |
coef<- | Methods of the "pomp" class |
coef<--method | Methods of the "pomp" class |
coef<--pomp | Methods of the "pomp" class |
coerce-method | Methods of the "pfilterd.pomp" class |
coerce-method | Methods of the "pomp" class |
coerce-method | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
compare.mif | Methods of the "mif" class |
compare.pmcmc | Methods of the "pmcmc" class |
cond.logLik | Methods of the "pfilterd.pomp" class |
cond.logLik-method | Methods of the "pfilterd.pomp" class |
cond.logLik-pfilterd.pomp | Methods of the "pfilterd.pomp" class |
continue | The MIF algorithm |
continue-abc | The ABC algorithm |
continue-method | The ABC algorithm |
continue-method | The MIF algorithm |
continue-method | The PMCMC algorithm |
continue-mif | The MIF algorithm |
continue-pmcmc | The PMCMC algorithm |
conv.rec | Methods of the "mif" class |
conv.rec-abc | Methods of the "abc" class |
conv.rec-method | Methods of the "abc" class |
conv.rec-method | Methods of the "mif" class |
conv.rec-method | Methods of the "pmcmc" class |
conv.rec-mif | Methods of the "mif" class |
conv.rec-pmcmc | Methods of the "pmcmc" class |
dacca | Model of cholera transmission for historic Bengal. |
data.array | Methods of the "pomp" class |
data.array-method | Methods of the "pomp" class |
data.array-pomp | Methods of the "pomp" class |
data.frame-pomp | Partially-observed Markov process object. |
deulermultinom | Euler-multinomial death process |
discrete.time.sim | Plug-ins for dynamical models based on stochastic Euler algorithms |
dprior-abc | Methods of the "abc" class |
dprior-method | Methods of the "abc" class |
eff.sample.size | Methods of the "pfilterd.pomp" class |
eff.sample.size-method | Methods of the "pfilterd.pomp" class |
eff.sample.size-pfilterd.pomp | Methods of the "pfilterd.pomp" class |
euler.sim | Plug-ins for dynamical models based on stochastic Euler algorithms |
euler.sir | SIR models. |
eulermultinom | Euler-multinomial death process |
filter.mean | Methods of the "pfilterd.pomp" class |
filter.mean-method | Methods of the "pfilterd.pomp" class |
filter.mean-method | Methods of the "pmcmc" class |
filter.mean-pfilterd.pomp | Methods of the "pfilterd.pomp" class |
filter.mean-pmcmc | Methods of the "pmcmc" class |
gillespie.sim | Plug-ins for dynamical models based on stochastic Euler algorithms |
gillespie.sir | SIR models. |
gompertz | Gompertz model with log-normal observations. |
logLik-method | Methods of the "mif" class |
logLik-method | Methods of the "pfilterd.pomp" class |
logLik-method | Methods of the "pmcmc" class |
logLik-method | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
logLik-method | Trajectory matching |
logLik-mif | Methods of the "mif" class |
logLik-pfilterd.pomp | Methods of the "pfilterd.pomp" class |
logLik-pmcmc | Methods of the "pmcmc" class |
logLik-probed.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
logLik-traj.matched.pomp | Trajectory matching |
logmeanexp | The log-mean-exp trick |
LondonYorke | Historical childhood disease incidence data |
matrix-pomp | Partially-observed Markov process object. |
mif | The MIF algorithm |
mif-method | The MIF algorithm |
mif-methods | Methods of the "mif" class |
mif-mif | The MIF algorithm |
mif-pfilterd.pomp | The MIF algorithm |
mif-pomp | The MIF algorithm |
nlf | Fit Model to Data Using Nonlinear Forecasting (NLF) |
numeric-pomp | Partially-observed Markov process object. |
obs | Methods of the "pomp" class |
obs-method | Methods of the "pomp" class |
obs-pomp | Methods of the "pomp" class |
onestep.dens | Plug-ins for dynamical models based on stochastic Euler algorithms |
onestep.sim | Plug-ins for dynamical models based on stochastic Euler algorithms |
ou2 | Two-dimensional discrete-time Ornstein-Uhlenbeck process |
parmat | Create a matrix of parameters |
partrans | Methods of the "pomp" class |
partrans-method | Methods of the "pomp" class |
partrans-pomp | Methods of the "pomp" class |
periodic.bspline.basis | B-spline bases |
pfilter | Particle filter |
pfilter-method | Particle filter |
pfilter-pfilterd.pomp | Particle filter |
pfilter-pomp | Particle filter |
pfilterd.pomp-class | Particle filter |
plot-abc | Methods of the "abc" class |
plot-bsmcd.pomp | Liu and West Bayesian Particle Filter |
plot-method | Methods of the "abc" class |
plot-method | Liu and West Bayesian Particle Filter |
plot-method | Methods of the "mif" class |
plot-method | Methods of the "pmcmc" class |
plot-method | Methods of the "pomp" class |
plot-method | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
plot-mif | Methods of the "mif" class |
plot-pmcmc | Methods of the "pmcmc" class |
plot-pomp | Methods of the "pomp" class |
plot-probe.matched.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
plot-probed.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
plot-spect.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
plugins | Plug-ins for dynamical models based on stochastic Euler algorithms |
pmcmc | The PMCMC algorithm |
pmcmc-class | The PMCMC algorithm |
pmcmc-method | The PMCMC algorithm |
pmcmc-methods | Methods of the "pmcmc" class |
pmcmc-pfilterd.pomp | The PMCMC algorithm |
pmcmc-pmcmc | The PMCMC algorithm |
pmcmc-pomp | The PMCMC algorithm |
pomp | Partially-observed Markov process object. |
pomp-method | Partially-observed Markov process object. |
pomp-methods | Methods of the "pomp" class |
pomp-pomp | Partially-observed Markov process object. |
pompBuilder | Write, compile, link, and build a pomp object using native codes |
pompExample | Pre-built examples of pomp objects. |
pred.mean | Methods of the "pfilterd.pomp" class |
pred.mean-method | Methods of the "pfilterd.pomp" class |
pred.mean-pfilterd.pomp | Methods of the "pfilterd.pomp" class |
pred.var | Methods of the "pfilterd.pomp" class |
pred.var-method | Methods of the "pfilterd.pomp" class |
pred.var-pfilterd.pomp | Methods of the "pfilterd.pomp" class |
print-method | Methods of the "pomp" class |
print-pomp | Methods of the "pomp" class |
probe | Probe a partially-observed Markov process. |
probe-method | Probe a partially-observed Markov process. |
probe-pomp | Probe a partially-observed Markov process. |
probe-probed.pomp | Probe a partially-observed Markov process. |
probe.acf | Some probes for partially-observed Markov processes |
probe.ccf | Some probes for partially-observed Markov processes |
probe.marginal | Some probes for partially-observed Markov processes |
probe.match | Probe a partially-observed Markov process. |
probe.match-method | Probe a partially-observed Markov process. |
probe.match-pomp | Probe a partially-observed Markov process. |
probe.match-probe.matched.pomp | Probe a partially-observed Markov process. |
probe.match-probed.pomp | Probe a partially-observed Markov process. |
probe.match.objfun | Probe a partially-observed Markov process. |
probe.match.objfun-method | Probe a partially-observed Markov process. |
probe.match.objfun-pomp | Probe a partially-observed Markov process. |
probe.match.objfun-probed.pomp | Probe a partially-observed Markov process. |
probe.matched.pomp-class | Probe a partially-observed Markov process. |
probe.matched.pomp-methods | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
probe.mean | Some probes for partially-observed Markov processes |
probe.median | Some probes for partially-observed Markov processes |
probe.nlar | Some probes for partially-observed Markov processes |
probe.period | Some probes for partially-observed Markov processes |
probe.quantile | Some probes for partially-observed Markov processes |
probe.sd | Some probes for partially-observed Markov processes |
probe.var | Some probes for partially-observed Markov processes |
probed.pomp-class | Probe a partially-observed Markov process. |
probed.pomp-methods | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
profileDesign | Design matrices for likelihood profile calculations. |
reulermultinom | Euler-multinomial death process |
rgammawn | Euler-multinomial death process |
ricker | Ricker model with Poisson observations. |
rw2 | Two-dimensional random-walk process |
sannbox | Simulated annealing with box constraints. |
show-method | Methods of the "pomp" class |
show-pomp | Methods of the "pomp" class |
simulate-method | Running simulations of a partially-observed Markov process |
simulate-pomp | Running simulations of a partially-observed Markov process |
sliceDesign | Design matrices for likelihood slices. |
sobol | Sobol' low-discrepancy sequence |
sobolDesign | Sobol' low-discrepancy sequence |
spect | Power spectrum computation for partially-observed Markov processes. |
spect-method | Power spectrum computation for partially-observed Markov processes. |
spect-pomp | Power spectrum computation for partially-observed Markov processes. |
spect-spect.pomp | Power spectrum computation for partially-observed Markov processes. |
spect.match | Power spectrum computation for partially-observed Markov processes. |
spect.match-method | Power spectrum computation for partially-observed Markov processes. |
spect.match-pomp | Power spectrum computation for partially-observed Markov processes. |
spect.match-spect.pomp | Power spectrum computation for partially-observed Markov processes. |
spect.matched.pomp-class | Power spectrum computation for partially-observed Markov processes. |
spect.matched.pomp-methods | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
spect.pomp-class | Power spectrum computation for partially-observed Markov processes. |
spect.pomp-methods | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
states | Methods of the "pomp" class |
states-method | Methods of the "pomp" class |
states-pomp | Methods of the "pomp" class |
summary-method | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
summary-method | Trajectory matching |
summary-probe.matched.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
summary-probed.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
summary-spect.matched.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
summary-spect.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
summary-traj.matched.pomp | Trajectory matching |
time-method | Methods of the "pomp" class |
time-pomp | Methods of the "pomp" class |
time<- | Methods of the "pomp" class |
time<--method | Methods of the "pomp" class |
time<--pomp | Methods of the "pomp" class |
timezero | Methods of the "pomp" class |
timezero-method | Methods of the "pomp" class |
timezero-pomp | Methods of the "pomp" class |
timezero<- | Methods of the "pomp" class |
timezero<--method | Methods of the "pomp" class |
timezero<--pomp | Methods of the "pomp" class |
traj.match | Trajectory matching |
traj.match-method | Trajectory matching |
traj.match-pomp | Trajectory matching |
traj.match-traj.matched.pomp | Trajectory matching |
traj.match.objfun | Trajectory matching |
traj.match.objfun-method | Trajectory matching |
traj.match.objfun-pomp | Trajectory matching |
traj.matched.pomp-class | Trajectory matching |
trajectory | Compute trajectories of the deterministic skeleton. |
trajectory-method | Compute trajectories of the deterministic skeleton. |
trajectory-pomp | Compute trajectories of the deterministic skeleton. |
verhulst | Simple Verhulst-Pearl (logistic) model. |
window-method | Methods of the "pomp" class |
window-pomp | Methods of the "pomp" class |
$-bsmcd.pomp | Liu and West Bayesian Particle Filter |
$-method | Liu and West Bayesian Particle Filter |
$-method | Methods of the "pfilterd.pomp" class |
$-method | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
$-method | Trajectory matching |
$-pfilterd.pomp | Methods of the "pfilterd.pomp" class |
$-probe.matched.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
$-probed.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
$-traj.matched.pomp | Trajectory matching |