Replicability Analysis for Multiple Studies of High Dimension

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Documentation for package ‘repfdr’ version 1.0

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em.control Control Parameters for the EM algorithm
hconfigs Enumeration of all possible vectors of association status.
Hmat Simulated data set
ldr Estimation of posterior probabilities for the vectors of association status
manhattan Bayes and local Bayes false discovery rate estimation for replicability analysis
Pi Estimation of the prior probabilities for each association status vector.
piem Estimation of the prior probabilities for each association status vector.
repfdr Bayes and local Bayes false discovery rate estimation for replicability analysis
simzmat Simulated data set
SNPlocations Three GWAS studies
zmat Three GWAS studies
ztobins Binning of z-scores and estimation of the probabilities in each bin for the null and non-null states.