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| add.hotspot | S4 generic method to add a hotspot to the density grid |
| add.hotspot-method | Class "Density" |
| create.bins | Create bins from a set of binned distances and a set of cutpoints. |
| create.region.table | S4 generic method to generate a region table |
| create.region.table-method | S4 generic method to generate a region table |
| create.sample.table | S4 generic method to generate a sample table |
| create.sample.table, | S4 generic method to generate a sample table |
| create.sample.table-method | S4 generic method to generate a sample table |
| create.survey.results | S4 generic method to simulate a survey |
| create.survey.results-method | S4 generic method to simulate a survey |
| DDF.Analysis-class | S4 Class "DDF.Analysis" |
| DDF.Data-class | S4 Class "DDF.Data" |
| Density-class | Class "Density" |
| description.summary | Provides a description of the summary object/output |
| Detectability-class | S4 Class "Detectability" |
| generate.population | S4 generic method to generate an instance of a population |
| generate.population-method | S4 generic method to generate an instance of a population |
| generate.transects | S4 generic method to generate an instance of a design |
| generate.transects-method | S4 generic method to generate an instance of a design |
| get.area | Returns the area of the region |
| get.area-method | Returns the area of the region |
| get.distance.data | S4 generic method to extract distance data |
| get.distance.data-method | S4 generic method to extract distance data |
| get.N | S4 generic method to return N |
| get.N-method | S4 generic method to return N |
| Line.Transect-class | S4 Class "Line.Transect" |
| LT.Design-class | S4 Class "LT.Design" |
| LT.Survey-class | S4 Class "LT.Survey" |
| LT.Survey.Results-class | S4 Class "LT.Survey.Results" |
| make.ddf.analysis.list | Creates a list of DDF.Analysis objects |
| make.density | Creates a Density object |
| make.design | Creates a Survey.Design object |
| make.detectability | Creates a Detectablility object |
| make.population.description | Creates a Population.Description object |
| make.region | Creates a Region object |
| make.simulation | Creates a Simulation object |
| Obs.Table-class | S4 Class "Obs.Table" |
| plot-method | Class "Density" |
| plot-method | S4 Class "LT.Survey.Results" |
| plot-method | S4 Class "Line.Transect" |
| plot-method | S4 Class "Population" |
| plot-method | S4 Class "Region" |
| plot-method | S4 Class "Simulation" |
| plot-method | S4 Class "Single.Obs.DDF.Data" |
| Population-class | S4 Class "Population" |
| Population.Description-class | S4 Class "Population.Description" |
| Region-class | S4 Class "Region" |
| Region.Table-class | S4 Class "Region.Table" |
| rename.duplicates | Renumbers the object IDs for the duplicate observations generated when bootstrapping |
| run | S4 generic method to run a simulation |
| run-method | S4 generic method to run a simulation |
| run.analysis | S4 generic method to run analyses |
| run.analysis-method | S4 Class "DDF.Analysis" |
| run.analysis-method | S4 generic method to run analyses |
| Sample.Table-class | S4 Class "Sample.Table" |
| show-method | S4 Class "Simulation" |
| show-method | S4 Class "Simulation.Summary" |
| Simulation-class | S4 Class "Simulation" |
| Simulation.Summary-class | S4 Class "Simulation.Summary" |
| Single.Obs.DDF.Data-class | S4 Class "Single.Obs.DDF.Data" |
| Single.Obs.LT.Survey-class | S4 Class "Single.Obs.LT.Survey" |
| summary-method | S4 Class "Simulation" |
| Survey-class | Virtual Class "Survey" |
| Survey-method | S4 generic method to generate a sample table |
| Survey.Design-class | S4 Class "Survey.Design" |
| transects.shp | Shapefile describing the transects |