Calculate The NLTT Statistic


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Documentation for package ‘nLTT’ version 1.0

Help Pages

nLTT-package Package providing functions to visualize the normalized Lineage-Through-Time statistic, and calculate the difference between two nLTT curves.
ABC_SMC_nLTT A function to perform Approximate Bayesian Computation within an Sequential Markov Chain (ABC-SMC), for diversification analysis of phylogenetic trees.
exampleTrees example trees to test the functionality of the package
MCMC_nLTT Code to perform Metropolis-Hastings MCMC for a diversification model, given a phylogenetic tree.
nLTT Package providing functions to visualize the normalized Lineage-Through-Time statistic, and calculate the difference between two nLTT curves.
nLTT.lines Normalized version of the ape function ltt.lines.
nLTT.plot Normalized version of the ape function ltt.plot
normLTTdiffABS Calculate the absolute difference between two normalized Lineage-Through-Time curves, given two phylogenetic trees.
normLTTdiffSQ Calculate the squared difference between two normalized Lineage-Through-Time curves, given two phylogenetic trees.