haplo.hpp {haplo.ccs} | R Documentation |
'haplo.hpp' obtains summary statistics of phase ambiguity. The proportion of subjects whose highest posterior diplotype probability is greater than or equal to a specified probability is reported.
haplo.hpp(model, prob=0.95)
model |
a fitted model of class '"haplo.ccs"'. |
prob |
the probability to which to compare the highest posterior diplotype probability for each subject. Note that the default probability is 0.95. Note also that either a single probability or a list of probabilities may be specified. |
The proportion of subjects whose highest posterior diplotype probability is greater than or equal to the specified probability or probabilities.
Benjamin French and Thomas Lumley, University of Washington
data(renin) haplo.hpp(model=haplo.ccs(case ~ haplo(geno)), prob=c(0.90, 0.95))