getFrag {seqinr}R Documentation

Generic Function to obtain a fragment of a sequence

Description

Methods for the classes of sequences: SeqFastadna, SeqFastaAA, SeqAcnucWeb, SeqFrag.

Usage

getFrag(object, begin, end)

Arguments

object an object of the class SeqFastadna, SeqFastaAA, SeqAcnucWeb or SeqFrag
begin First base
end Last base

Value

An object of class SeqFrag, which is a vector of chars with many attributes:

seqMother the name of the sequence from which the sequence comes
begin the position of the first base of the fragment on the mother sequence
end the position of the last base of the fragment on the mother sequence
class the class of the new sequence i.e. SeqFrag

Author(s)

D. Charif

References

  citation("seqinr")

See Also

getSequence

Examples

  methods(getFrag)

[Package seqinr version 1.0-4 Index]