intervals {SNPassoc}R Documentation

Print ORs and 95% confidence intervals for an object of class 'haplo.glm'

Description

Print ORs and confidence intervals for an object of class 'haplo.glm'

Usage

intervals(o, level=.95, ...)
intervals.haplo.glm(o, level=.95, sign = 1, FUN=exp, ...)
print.intervals(x, len = 6, d = 2, exclude.intercept=TRUE, pval=TRUE, ...)
summary.haplo.glm(object, ...)

Arguments

o object of class 'haplo.glm'
x object of class 'haplo.glm'
object object of class 'haplo.glm'
level significance level. Default is 95 percent
sign sign
FUN
len length
d number of decimals
exclude.intercept is the intercept excluded?
pval is p value printed?
... other arguments

Examples

# Not Run
# data(SNPs)
# tag.SNPs<-c("snp100019","snp10001","snp100029")
# geno<-make.geno(SNPs,tag.SNPs)

# mod<-haplo.glm(casco~geno,data=SNPs, 
#      family=binomial,
#       locus.label=tag.SNPs,
#       allele.lev=attributes(geno)$unique.alleles,
#       control = haplo.glm.control(haplo.freq.min=0.05))

# intervals(mod)
# summary(mod)


[Package SNPassoc version 1.0-2 Index]