plot.qb.scanone {qtlbim} | R Documentation |
Plot or print marginal diagnostics of effects from a qb.scanone object.
print.qb.scanone(x, ...) plot.qb.scanone(x, chr, smooth = 0, scan, ylim, scan.name, col, main, verbose = FALSE, ...)
x |
An object of class qb.scanone . |
chr |
Vector of chromosomes to plot. Must be integer. |
smooth |
Perform smoothing. If O don't smooth. If larger, then
smooth over smooth adjacent points. |
scan |
The model effects to include, the default is all
those included in the scanone object x . |
ylim |
Limits for vertical (y) axis; default uses data limits. |
scan.name |
Name used in automatically generated main title. |
col |
Named vector of colors for plot. Names of colors correspond
to effects to be plotted. Unnamed colors will be made "black" . |
main |
Main title for the plot |
verbose |
Give verbose feedback if TRUE . |
... |
Other values passed to the generic plot function. |
This plot method uses plot.scanone
as the engine to plot
marginal posterior diagnostics created with qb.scanone
. When
there are multiple effects in x
, these may be organized into one
or several stacked plots using scan
. The default for most
diagnostics except counts is scan
= c("sum", "main",
"epis"). Counts and posterior diagnostics are typically plotted in two
stacked plots. Individual columns from the x
object can be
plotted by specifying their names as a vector to option scan
.
Colors used in plots as character vector.
Brian S. Yandell, yandell@stat.wisc.edu
qb.scanone
, summary.qb.scanone
,
plot.scanone
example(qb.scanone)