qb.slicetwo {qtlbim}R Documentation

Slices for epistatic pairs.

Description

These routines refine QTL positions for epistatic pairs and show plots to reveal the nature of epistasis.

Usage

qb.slicetwo(qbObject, chr, pos, type = "2logBF", width = 10)
## S3 methods.
summary.qb.slicetwo(object, ...)
print.qb.slicetwo(x, ...)
plot.qb.slicetwo(x, byrow = TRUE, figs, auto.par = TRUE, ...)

Arguments

qbObject Object of class qb.
object Object of class qb.slicetwo.
x Object of class qb.slicetwo.
chr Chromosome vector.
pos Position vector corresponding to chr.
type Type of profile scan; see qb.scanone.
width Width of slice.
byrow Arrange plots by row (for slides) if TRUE.
figs Plot only selected figures. Full set of c("profile", "effects", "cellmean", "effectplot") is default.
auto.par Automatic setting of plot parameters for multiple plots if TRUE.
... Extra plot options.

Author(s)

Brian S. Yandell, yandell@stat.wisc.edu

References

http://www.ssg.uab.edu/qtlbim

See Also

qb.scantwo, qb.sliceone

Examples


temp <- qb.slicetwo(qbExample, chr = c(5,7), pos = c(15,15))
summary(temp)
plot(temp)

[Package qtlbim version 1.6.0 Index]