plot.qb.loci {qtlbim} | R Documentation |
Each point is one locus from the Bayesian QTL estimates, plotted vertically by chromosome, jittered to give a sense of density.
qb.loci(qbObject, ...) plot.qb.loci(x, labels=FALSE, amount=0.35, cex, ... )
qbObject |
Object of class qb . |
x |
Object of class qb.loci . |
labels |
Include marker labels if TRUE. |
amount |
Amount of jitter (between 0 and .45) |
cex |
Character expansion (may be invisible if too small–default based on number of MCMC samples). |
... |
Graphical parameters can be given as arguments to
plot . Not used in qb.loci . |
Focuses attention on chromosome lengths and concentration of QTL loci
estimates. Horizontal blue lines at markers if cross
included. Adjust amount
and cex
to modify look of
plot. Most useful when looking at multiple chromosomes.
Brian S. Yandell, yandell@stat.wisc.edu
temp <- qb.loci(qbExample) plot(temp)