calcICs {GOSim} | R Documentation |
Recalculates the information content of all GO terms.
calcICs()
none
This functions should only be invoked, if one wants to calculate the information content for GO terms with respect to combinations of evidence codes other than the precomputed ones or, if a new version of the "GO" library has been installed. By default the information contents are precomputed using all evidence codes and evidence codes "IMP, IGI, IDA, IEP, IPI" together.
Puts a file named "ICs<ontology><evidence levels>.rda" in the current directoy. This file has then to be moved into the data directory of gosim.
## Not run: setOntology("CC") calcICs() ## End(Not run) # --> this may take some time ...