setEvidenceLevel {GOSim} | R Documentation |
Specifies to use only GO terms with given evidence codes.
setEvidenceLevel(evidences = "all")
evidences |
character vector of evidence codes |
Each evidence code can be one of: begin{ldescription}
Mappings were based on data provided by:
Entrez Gene: <URL: http://gopher5/compbio/annotationSourceData/ftp.ncbi.nlm.nih.gov/gene/DATA/>. Built: Source data downloaded from Entrez Gene on Fri Sep 30 02:51:32 2005
none.
The method directly uses the "GO" library to obtain the mappings
of the Entrez Gene IDs to GO terms. Internally this mapping is
especially used for calculating the information content of the GO
terms. By default all evidence codes are used for this. If another
behavior is wanted, one has to recalculate the information content of
all GO terms via calcICs
.
The evidence level also influences the behavior of
filterGO
and getGOInfo
.
Holger Froehlich
<URL: http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene>
## Not run: setEvidenceLevel("all") # the default behavior