a problem solving environment for fitting superposition models


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Documentation for package `TIMP' version 1.3

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A B C D E F G I K L M N O P R S T W

-- --

TIMP-package a problem solving environment for fitting superposition models

-- A --

addDscal TIMP function used internally
addPrel TIMP function used internally
addPrelCl TIMP function used internally
applyWeighting TIMP function used internally
applyWeightingModel TIMP function used internally

-- B --

baseCorlambda TIMP function used internally
baseCortime TIMP function used internally
baseIRF Baseline subtraction from a vector, usually representing an IRF.

-- C --

calcB TIMP function used internally
calcC TIMP function used internally
calcCirf TIMP function used internally
calcEbspline TIMP function used internally
calcEhiergaus TIMP function used internally
compCoh TIMP function used internally
compModel TIMP function used internally

-- D --

dat Class "dat" for model and data storage
dat-class Class "dat" for model and data storage
diffAdd TIMP function used internally
diffChange TIMP function used internally
diffFree TIMP function used internally
diffRel TIMP function used internally
diffRemove TIMP function used internally
displayEst TIMP function used internally
doClpConstr TIMP function used internally
doSVD TIMP function used internally

-- E --

examineFit Examines the results of a call to fitModel

-- F --

fillK TIMP function used internally
fillResult TIMP function used internally
fit Class "fit" to store the results of model fitting associated with all datasets analyzed.
fit-class Class "fit" to store the results of model fitting associated with all datasets analyzed.
fitModel Performs optimization of (possibly multidataset) models.
fullKF TIMP function used internally

-- G --

gaus TIMP function used internally
getClpConstr TIMP function used internally
getClpindepX Generic function getClpindepX in Package `TIMP'
getClpindepX,kin-method Generic function getClpindepX in Package `TIMP'
getClpindepX,spec-method Generic function getClpindepX in Package `TIMP'
getClpindepX-methods Generic function getClpindepX in Package `TIMP'
getClpList TIMP function used internally
getCoh TIMP function used internally
getCohToPlot TIMP function used internally
getConToPlot TIMP function used internally
getDiffTheta TIMP function used internally
getDiffThetaChange TIMP function used internally
getDiffThetaCl TIMP function used internally
getDiffThetaClChange TIMP function used internally
getFixed TIMP function used internally
getGroups TIMP function used internally
getModel TIMP function used internally
getPar TIMP function used internally
getPrel TIMP function used internally
getPrelTheta TIMP function used internally
getResid For data correction, fits a model (but ignores plotting commands) in order to obtain the SVD of the residuals, which then can be used in data-correction.
getSpecList TIMP function used internally
getSpecToPlot TIMP function used internally
getTheta TIMP function used internally
getThetaCl TIMP function used internally

-- I --

init.dat TIMP function used internally
init.fc TIMP function used internally
init.fit TIMP function used internally
init.het TIMP function used internally
init.kin TIMP function used internally
init.kinopt TIMP function used internally
init.multimodel TIMP function used internally
init.multitheta TIMP function used internally
init.opt TIMP function used internally
init.res TIMP function used internally
init.spec TIMP function used internally
init.specopt TIMP function used internally
init.theta TIMP function used internally
initModel Defines the model to be used in analysis.
initModellist TIMP function used internally
Internals TIMP function used internally
irfparF TIMP function used internally

-- K --

kin Class "kin" for kinetic model storage.
kin-class Class "kin" for kinetic model storage.
kinopt Class "kinopt" stores options for fitting and plotting kinetic models
kinopt-class Class "kinopt" stores options for fitting and plotting kinetic models

-- L --

l2nu TIMP function used internally
linloglines TIMP function used internally
linlogplot TIMP function used internally

-- M --

matlinlogplot TIMP function used internally
modifyModel Allows the starting values for parameters associated with a model to be updated with the values found in fitting the model.
multiLin TIMP function used internally
multimodel Class "multimodel" for storage of multidataset models, data and the results of fitting.
multimodel-class Class "multimodel" for storage of multidataset models, data and the results of fitting.
multitheta Class "multitheta" that stores a list with one element of class "theta" for each dataset modeled.
multitheta-class Class "multitheta" that stores a list with one element of class "theta" for each dataset modeled.

-- N --

normdat TIMP function used internally

-- O --

opt Class "opt" stores options for fitting and plotting
opt-class Class "opt" stores options for fitting and plotting

-- P --

plotEst TIMP function used internally
plotFLIM TIMP function used internally
plotKinBreakDown TIMP function used internally
plotKinSpec TIMP function used internally
plotKinSpecEst TIMP function used internally
plotSelectedSpectra TIMP function used internally
plotSelectedTraces TIMP function used internally
plotSelectedTracesSuper TIMP function used internally
plotSpectra TIMP function used internally
plotter Generic function plotter in Package `TIMP'
plotter,kin-method Generic function plotter in Package `TIMP'
plotter,spec-method Generic function plotter in Package `TIMP'
plotter-methods Generic function plotter in Package `TIMP'
plotTraces TIMP function used internally
plotTracesSuper TIMP function used internally
preProcess Performs preprocessing on data stored as an objects of class dat.
processOrder TIMP function used internally

-- R --

readData This function reads in data the ivo file format
res Class "res" to store the results of model fitting associated with a single dataset.
res-class Class "res" to store the results of model fitting associated with a single dataset.
rescomp TIMP function used internally
residPart Generic function residPart in Package `TIMP'
residPart,kin-method Generic function residPart in Package `TIMP'
residPart,spec-method Generic function residPart in Package `TIMP'
residPart-methods Generic function residPart in Package `TIMP'

-- S --

sample_sel TIMP function used internally
setGenerics TIMP function used internally
setMethods TIMP function used internally
set_getClpindepX TIMP function used internally
set_getClpindepX_kin TIMP function used internally
set_getClpindepX_spec TIMP function used internally
set_plotter_kin TIMP function used internally
set_plotter_spec TIMP function used internally
set_residPart_kin TIMP function used internally
set_residPart_spec TIMP function used internally
simndecay_gen TIMP function used internally
simpExp TIMP function used internally
simpPol TIMP function used internally
skew TIMP function used internally
spec Class "spec" for the storage of spectral models.
spec-class Class "spec" for the storage of spectral models.
specModel TIMP function used internally
specopt Class "specopt" stores options for fitting and plotting spectral models
specopt-class Class "specopt" stores options for fitting and plotting spectral models
specparF TIMP function used internally
sumKinSpecEst Makes a summary plot of spectra associated with kinetic components alongside a plot showing parameter estimates

-- T --

theta Class "theta" for storage of nonlinear parameter estimates
theta-class Class "theta" for storage of nonlinear parameter estimates
TIMP a problem solving environment for fitting superposition models
timpErrors TIMP function used internally

-- W --

weightNL TIMP function used internally
weightPsi TIMP function used internally
weightSM TIMP function used internally
writeEst TIMP function used internally
writeFit TIMP function used internally