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A B C D E F G I K L M N O P R S T W
| TIMP-package | a problem solving environment for fitting superposition models |
| addDscal | TIMP function used internally |
| addPrel | TIMP function used internally |
| addPrelCl | TIMP function used internally |
| applyWeighting | TIMP function used internally |
| applyWeightingModel | TIMP function used internally |
| baseCorlambda | TIMP function used internally |
| baseCortime | TIMP function used internally |
| baseIRF | Baseline subtraction from a vector, usually representing an IRF. |
| calcB | TIMP function used internally |
| calcC | TIMP function used internally |
| calcCirf | TIMP function used internally |
| calcEbspline | TIMP function used internally |
| calcEhiergaus | TIMP function used internally |
| compCoh | TIMP function used internally |
| compModel | TIMP function used internally |
| dat | Class "dat" for model and data storage |
| dat-class | Class "dat" for model and data storage |
| diffAdd | TIMP function used internally |
| diffChange | TIMP function used internally |
| diffFree | TIMP function used internally |
| diffRel | TIMP function used internally |
| diffRemove | TIMP function used internally |
| displayEst | TIMP function used internally |
| doClpConstr | TIMP function used internally |
| doSVD | TIMP function used internally |
| examineFit | Examines the results of a call to fitModel |
| fillK | TIMP function used internally |
| fillResult | TIMP function used internally |
| fit | Class "fit" to store the results of model fitting associated with all datasets analyzed. |
| fit-class | Class "fit" to store the results of model fitting associated with all datasets analyzed. |
| fitModel | Performs optimization of (possibly multidataset) models. |
| fullKF | TIMP function used internally |
| gaus | TIMP function used internally |
| getClpConstr | TIMP function used internally |
| getClpindepX | Generic function getClpindepX in Package `TIMP' |
| getClpindepX,kin-method | Generic function getClpindepX in Package `TIMP' |
| getClpindepX,spec-method | Generic function getClpindepX in Package `TIMP' |
| getClpindepX-methods | Generic function getClpindepX in Package `TIMP' |
| getClpList | TIMP function used internally |
| getCoh | TIMP function used internally |
| getCohToPlot | TIMP function used internally |
| getConToPlot | TIMP function used internally |
| getDiffTheta | TIMP function used internally |
| getDiffThetaChange | TIMP function used internally |
| getDiffThetaCl | TIMP function used internally |
| getDiffThetaClChange | TIMP function used internally |
| getFixed | TIMP function used internally |
| getGroups | TIMP function used internally |
| getModel | TIMP function used internally |
| getPar | TIMP function used internally |
| getPrel | TIMP function used internally |
| getPrelTheta | TIMP function used internally |
| getResid | For data correction, fits a model (but ignores plotting commands) in order to obtain the SVD of the residuals, which then can be used in data-correction. |
| getSpecList | TIMP function used internally |
| getSpecToPlot | TIMP function used internally |
| getTheta | TIMP function used internally |
| getThetaCl | TIMP function used internally |
| init.dat | TIMP function used internally |
| init.fc | TIMP function used internally |
| init.fit | TIMP function used internally |
| init.het | TIMP function used internally |
| init.kin | TIMP function used internally |
| init.kinopt | TIMP function used internally |
| init.multimodel | TIMP function used internally |
| init.multitheta | TIMP function used internally |
| init.opt | TIMP function used internally |
| init.res | TIMP function used internally |
| init.spec | TIMP function used internally |
| init.specopt | TIMP function used internally |
| init.theta | TIMP function used internally |
| initModel | Defines the model to be used in analysis. |
| initModellist | TIMP function used internally |
| Internals | TIMP function used internally |
| irfparF | TIMP function used internally |
| kin | Class "kin" for kinetic model storage. |
| kin-class | Class "kin" for kinetic model storage. |
| kinopt | Class "kinopt" stores options for fitting and plotting kinetic models |
| kinopt-class | Class "kinopt" stores options for fitting and plotting kinetic models |
| l2nu | TIMP function used internally |
| linloglines | TIMP function used internally |
| linlogplot | TIMP function used internally |
| matlinlogplot | TIMP function used internally |
| modifyModel | Allows the starting values for parameters associated with a model to be updated with the values found in fitting the model. |
| multiLin | TIMP function used internally |
| multimodel | Class "multimodel" for storage of multidataset models, data and the results of fitting. |
| multimodel-class | Class "multimodel" for storage of multidataset models, data and the results of fitting. |
| multitheta | Class "multitheta" that stores a list with one element of class "theta" for each dataset modeled. |
| multitheta-class | Class "multitheta" that stores a list with one element of class "theta" for each dataset modeled. |
| normdat | TIMP function used internally |
| opt | Class "opt" stores options for fitting and plotting |
| opt-class | Class "opt" stores options for fitting and plotting |
| plotEst | TIMP function used internally |
| plotFLIM | TIMP function used internally |
| plotKinBreakDown | TIMP function used internally |
| plotKinSpec | TIMP function used internally |
| plotKinSpecEst | TIMP function used internally |
| plotSelectedSpectra | TIMP function used internally |
| plotSelectedTraces | TIMP function used internally |
| plotSelectedTracesSuper | TIMP function used internally |
| plotSpectra | TIMP function used internally |
| plotter | Generic function plotter in Package `TIMP' |
| plotter,kin-method | Generic function plotter in Package `TIMP' |
| plotter,spec-method | Generic function plotter in Package `TIMP' |
| plotter-methods | Generic function plotter in Package `TIMP' |
| plotTraces | TIMP function used internally |
| plotTracesSuper | TIMP function used internally |
| preProcess | Performs preprocessing on data stored as an objects of class dat. |
| processOrder | TIMP function used internally |
| readData | This function reads in data the ivo file format |
| res | Class "res" to store the results of model fitting associated with a single dataset. |
| res-class | Class "res" to store the results of model fitting associated with a single dataset. |
| rescomp | TIMP function used internally |
| residPart | Generic function residPart in Package `TIMP' |
| residPart,kin-method | Generic function residPart in Package `TIMP' |
| residPart,spec-method | Generic function residPart in Package `TIMP' |
| residPart-methods | Generic function residPart in Package `TIMP' |
| sample_sel | TIMP function used internally |
| setGenerics | TIMP function used internally |
| setMethods | TIMP function used internally |
| set_getClpindepX | TIMP function used internally |
| set_getClpindepX_kin | TIMP function used internally |
| set_getClpindepX_spec | TIMP function used internally |
| set_plotter_kin | TIMP function used internally |
| set_plotter_spec | TIMP function used internally |
| set_residPart_kin | TIMP function used internally |
| set_residPart_spec | TIMP function used internally |
| simndecay_gen | TIMP function used internally |
| simpExp | TIMP function used internally |
| simpPol | TIMP function used internally |
| skew | TIMP function used internally |
| spec | Class "spec" for the storage of spectral models. |
| spec-class | Class "spec" for the storage of spectral models. |
| specModel | TIMP function used internally |
| specopt | Class "specopt" stores options for fitting and plotting spectral models |
| specopt-class | Class "specopt" stores options for fitting and plotting spectral models |
| specparF | TIMP function used internally |
| sumKinSpecEst | Makes a summary plot of spectra associated with kinetic components alongside a plot showing parameter estimates |
| theta | Class "theta" for storage of nonlinear parameter estimates |
| theta-class | Class "theta" for storage of nonlinear parameter estimates |
| TIMP | a problem solving environment for fitting superposition models |
| timpErrors | TIMP function used internally |
| weightNL | TIMP function used internally |
| weightPsi | TIMP function used internally |
| weightSM | TIMP function used internally |
| writeEst | TIMP function used internally |
| writeFit | TIMP function used internally |