Analogue methods for palaeoecology

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Documentation for package `analogue' version 0.4-3

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analogue-package Analogue methods for palaeoecology
analog Analogue matching
analogue Analogue methods for palaeoecology
bayesF Bayes factors
bootstrap Bootstrap estimation and errors
bootstrapObject Bootstrap object description
cma Close modern analogues
dissim Extract dissimilarity coefficients from models
dissimilarities Extract dissimilarity coefficients from models
distance Flexibly calculate dissimilarity or distance measures
fitted.bootstrap.mat Bootstrap estimation and errors
fitted.mat Modern Analogue Technique transfer function models
getK Extract and set the number of analogues
getK.bootstrap.mat Extract and set the number of analogues
getK.default Extract and set the number of analogues
getK.mat Extract and set the number of analogues
join Merge species data sets on common columns (species)
mat Modern Analogue Technique transfer function models
mcarlo Monte Carlo simulation of dissimilarities
minDC Extract minimum dissimilarities
minDC.predict.mat Extract minimum dissimilarities
plot.bayesF Bayes factors
plot.cma Close modern analogues
plot.dissimilarities Plots the distribution of extracted dissimilarities
plot.mat Plot diagnostics for a mat object
plot.mcarlo Plot Monte Carlo simulated dissimilarity distributions
plot.minDC Plot of minimum dissimilarity per sample
plot.roc Plot ROC curves and associated diagnostics
predict.mat Predict method for Modern Analogue Technique models
print.analog Analogue matching
print.bayesF Bayes factors
print.bootstrap.mat Bootstrap estimation and errors
print.cma Close modern analogues
print.fitted.bootstrap.mat Bootstrap estimation and errors
print.fitted.mat Modern Analogue Technique transfer function models
print.mat Modern Analogue Technique transfer function models
print.mcarlo Monte Carlo simulation of dissimilarities
print.minDC Extract minimum dissimilarities
print.predict.mat Predict method for Modern Analogue Technique models
print.residuals.bootstrap.mat Bootstrap estimation and errors
print.residuals.mat Modern Analogue Technique transfer function models
print.roc ROC curve analysis
print.summary.analog Summarise analogue matching results
print.summary.bootstrap.mat Summarise bootstrap resampling for MAT models
print.summary.cma Summarise the extraction of close modern analogues
print.summary.mat Summarise Modern Analogue Technique models
print.summary.predict.mat Summarise MAT model predictions
reconPlot Stratigraphic plots of palaeoenvironmental reconstructions
reconPlot.predict.mat Stratigraphic plots of palaeoenvironmental reconstructions
reconPlot.predict.wa Stratigraphic plots of palaeoenvironmental reconstructions
resid.bootstrap.mat Bootstrap estimation and errors
resid.mat Modern Analogue Technique transfer function models
residuals.bootstrap.mat Bootstrap estimation and errors
residuals.mat Modern Analogue Technique transfer function models
rlgh Round Loch of Glenhead Diatoms
RMSEP Root mean square error of prediction
RMSEP.bootstrap.mat Root mean square error of prediction
RMSEP.bootstrap.wa Root mean square error of prediction
RMSEP.default Root mean square error of prediction
RMSEP.mat Root mean square error of prediction
roc ROC curve analysis
screeplot.bootstrap.mat Screeplots of model results
screeplot.mat Screeplots of model results
summary.analog Summarise analogue matching results
summary.bootstrap.mat Summarise bootstrap resampling for MAT models
summary.cma Summarise the extraction of close modern analogues
summary.mat Summarise Modern Analogue Technique models
summary.predict.mat Summarise MAT model predictions
swapdiat SWAP sub-fossil diatom and pH training set
swappH SWAP sub-fossil diatom and pH training set