qb.remove {qtlbim} | R Documentation |
This removes the object and the directory that contains the MCMC samples. It is not enough to remove the R object.
qb.remove(qbObject, verbose = TRUE) qb.recover(cross, traitName, output.dir, n.thin = 40, n.burnin, algorithm = "M-H", genoupdate = FALSE, ...)
qbObject |
Object of class qb (see qb.mcmc ). |
verbose |
Print warning if TRUE . |
cross |
Object of class cross (see read.cross ). |
traitName |
Character string name of trait to recover. |
output.dir |
Character string with name of output directory (inferred if missing). |
n.thin |
Thining of MCMC chain used in qb.mcmc . |
n.burnin |
Burnin of MCMC chain used in qb.mcmc . |
algorithm |
Algorithm of MCMC chain used in qb.mcmc . |
genoupdate |
Genotype update flag for MCMC chain used in qb.mcmc . |
... |
Options passed to qb.data and
qb.model . |
At the present time, qb.mcmc
stores MCMC samples in
external files located in directory output.dir
, whose name is
typically the traitName
followed by the date. qb.remove
removes this directory along with the
qbObject
. qb.recover
attempts to recover the use of an
orphaned output.dir
after a crash of R. These are fragile routines.
Brian S. Yandell
http://www.qtlbim.org
## Not run: ## Recover qbExample for trait "bp" of cross "hyper" using default output.dir. qbExample <- qb.recover(hyper, "bp") ## Remove internal qbExample and external output.dir. qb.remove(qbExample) ## End(Not run)