* using log directory 'd:/Rcompile/CRANpkg/local/2.6/BootCL.Rcheck' * using R version 2.6.2 RC (2008-02-04 r44320) * checking for file 'BootCL/DESCRIPTION' ... OK * this is package 'BootCL' version '1.7' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'BootCL' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE BootCL.Statistic: no visible binding for global variable 'HG.U133A' BootCL.Statistic: no visible binding for global variable 'HG.U133B' BootCL.Statistic: no visible binding for global variable 'MG.U74Av2' BootCL.Statistic: no visible binding for global variable 'MG.U74Bv2' BootCL.Statistic: no visible binding for global variable 'MG.U74Cv2' BootCL.Statistic: no visible binding for global variable 'RG.U34A' BootCL.Statistic: no visible binding for global variable 'RG.U34B' BootCL.Statistic: no visible binding for global variable 'RG.U34C' BootCL.Statistic: no visible binding for global variable 'Hgfocus' BootCL.Statistic: no visible binding for global variable 'Hgu133plus2' BootCL.Statistic: no visible binding for global variable 'Hgu133A2' BootCL.Statistic: no visible binding for global variable 'Mouse4302' BootCL.Statistic: no visible binding for global variable 'Mouse430A2' BootCL.Statistic: no visible binding for global variable 'hwgcod' BootCL.Statistic: no visible binding for global variable 'mwgcod' BootCL.Statistic: no visible binding for global variable 'rwgcod' BootCL.Statistic: no visible binding for global variable 'hgug4112a' BootCL.Statistic: no visible binding for global variable 'hgug4110b' BootCL.Statistic: no visible binding for global variable 'mgug4122a' BootCL.Statistic: no visible binding for global variable 'chickenChip' BootCL.Statistic: no visible binding for global variable 'total.count.ws' BootCL.distribution: no visible binding for global variable 'HG.U133A' BootCL.distribution: no visible binding for global variable 'HG.U133B' BootCL.distribution: no visible binding for global variable 'MG.U74Av2' BootCL.distribution: no visible binding for global variable 'MG.U74Bv2' BootCL.distribution: no visible binding for global variable 'MG.U74Cv2' BootCL.distribution: no visible binding for global variable 'RG.U34A' BootCL.distribution: no visible binding for global variable 'RG.U34B' BootCL.distribution: no visible binding for global variable 'RG.U34C' BootCL.distribution: no visible binding for global variable 'Hgfocus' BootCL.distribution: no visible binding for global variable 'Hgu133plus2' BootCL.distribution: no visible binding for global variable 'Hgu133A2' BootCL.distribution: no visible binding for global variable 'Mouse4302' BootCL.distribution: no visible binding for global variable 'Mouse430A2' BootCL.distribution: no visible binding for global variable 'hwgcod' BootCL.distribution: no visible binding for global variable 'mwgcod' BootCL.distribution: no visible binding for global variable 'rwgcod' BootCL.distribution: no visible binding for global variable 'hgug4112a' BootCL.distribution: no visible binding for global variable 'hgug4110b' BootCL.distribution: no visible binding for global variable 'mgug4122a' BootCL.distribution: no visible binding for global variable 'chickenChip' BootCL.distribution: no visible binding for global variable 'total.count.ws' find.ID: no visible binding for global variable 'affy.hgu133a' find.ID: no visible binding for global variable 'HG.U133A' find.ID: no visible binding for global variable 'affy.hgu133b' find.ID: no visible binding for global variable 'HG.U133B' find.ID: no visible binding for global variable 'affy.mgu74av2' find.ID: no visible binding for global variable 'MG.U74Av2' find.ID: no visible binding for global variable 'affy.mgu74bv2' find.ID: no visible binding for global variable 'MG.U74Bv2' find.ID: no visible binding for global variable 'affy.mgu74cv2' find.ID: no visible binding for global variable 'MG.U74Cv2' find.ID: no visible binding for global variable 'affy.rgu34a' find.ID: no visible binding for global variable 'RG.U34A' find.ID: no visible binding for global variable 'affy.rgu34b' find.ID: no visible binding for global variable 'RG.U34B' find.ID: no visible binding for global variable 'affy.rgu34c' find.ID: no visible binding for global variable 'RG.U34C' find.ID: no visible binding for global variable 'affy.hgfocus' find.ID: no visible binding for global variable 'Hgfocus' find.ID: no visible binding for global variable 'affy.hgu133plus2' find.ID: no visible binding for global variable 'Hgu133plus2' find.ID: no visible binding for global variable 'affy.hgu133a2' find.ID: no visible binding for global variable 'Hgu133A2' find.ID: no visible binding for global variable 'affy.mouse4302' find.ID: no visible binding for global variable 'Mouse4302' find.ID: no visible binding for global variable 'affy.mouse430a2' find.ID: no visible binding for global variable 'Mouse430A2' find.ID: no visible binding for global variable 'codelink.hwgcod' find.ID: no visible binding for global variable 'hwgcod' find.ID: no visible binding for global variable 'codelink.mwgcod' find.ID: no visible binding for global variable 'mwgcod' find.ID: no visible binding for global variable 'codelink.rwgcod' find.ID: no visible binding for global variable 'rwgcod' find.ID: no visible binding for global variable 'agilent.hgug4112a' find.ID: no visible binding for global variable 'hgug4112a' find.ID: no visible binding for global variable 'agilent.hgug4110b' find.ID: no visible binding for global variable 'hgug4110b' find.ID: no visible binding for global variable 'agilent.mgug4122a' find.ID: no visible binding for global variable 'mgug4122a' find.ID: no visible binding for global variable 'affy.chickenChip' find.ID: no visible binding for global variable 'chickenChip' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating BootCL-Ex.R ... OK * checking examples ... OK * creating BootCL-manual.tex ... OK * checking BootCL-manual.tex ... OK