* using log directory 'd:/Rcompile/CRANpkg/local/2.6/mixstock.Rcheck' * using R version 2.6.2 RC (2008-02-04 r44320) * checking for file 'mixstock/DESCRIPTION' ... OK * this is package 'mixstock' version '0.8.4.2' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'mixstock' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'AIC.mixstock.est': AIC.mixstock.est boxplot.mixstock.est coef.mixstock.est logLik.mixstock.est confint.mixstock.est S3 methods shown with full name in documentation object 'as.mcmc.bugs': as.mcmc.bugs S3 methods shown with full name in documentation object 'as.mixstock.data': plot.mixstock.data S3 methods shown with full name in documentation object 'coef.toptim': coef.toptim logLik.toptim S3 methods shown with full name in documentation object 'plot.mixstock.est': plot.mixstock.est The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating mixstock-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating mixstock-manual.tex ... OK * checking mixstock-manual.tex ... OK