* using log directory 'd:/Rcompile/CRANpkg/local/2.6/mvbutils.Rcheck' * using R version 2.6.2 RC (2008-02-04 r44320) * checking for file 'mvbutils/DESCRIPTION' ... OK * this is package 'mvbutils' version '1.1.1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'mvbutils' can be installed ... WARNING Found the following significant warnings: WARNING: true value of 'SaveImage' is deprecated in favour of 'LazyLoad: true' See 'd:/Rcompile/CRANpkg/local/2.6/mvbutils.Rcheck/00install.out' for details. * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... WARNING MVBUTILS: no "tasks" vector found in ROOT Error in as.environment(pos) : invalid 'pos' argument Error: .onLoad failed in 'loadNamespace' for 'mvbutils' Execution halted A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. * checking for unstated dependencies in R code ... WARNING 'library' or 'require' calls not declared from: tools See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... WARNING as.data.frame: function(x, row.names, optional, ...) as.data.frame.I: function(x, row.names, optional) See section 'Generic functions and methods' of the 'Writing R Extensions' manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE FF: no visible global function definition for 'replace.underscores' FF: no visible binding for global variable 'tracees' FF : : no visible global function definition for 'mtrace' Save.pos: no visible global function definition for 'warn' Save.pos: no visible binding for global variable '.' Save.pos: no visible binding for global variable 'mvb.db.type' cd..: no visible binding for global variable 'execute.Last' cd.load: no visible binding for global variable 'execute.First' cd.write.mvb.tasks: no visible binding for global variable '.' cdfind: no visible binding for global variable '.' cdtree: no visible binding for global variable '.' cdtree: no visible binding for global variable 'x' create.backups: no visible binding for global variable '.' deal.with.backups: no visible global function definition for 'warn' demlazy: no visible binding for global variable '.' discard.mouldering.backups: no visible binding for global variable 'backup.fix' doc2Rd: no visible binding for global variable 'description' doc2Rd: no visible binding for global variable 'usage' doc2Rd: no visible binding for global variable 'synopsis' doc2Rd: no visible binding for global variable 'arguments' doc2Rd: no visible binding for global variable 'arguments.' doc2Rd: no visible binding for global variable 'value' doc2Rd: no visible binding for global variable 'details' doc2Rd: no visible binding for global variable 'examples' doc2Rd: no visible binding for global variable 'author' doc2Rd: no visible binding for global variable 'references' doc2Rd: no visible binding for global variable 'note' doc2Rd: no visible binding for global variable 'see.also' doc2Rd: no visible binding for global variable 'keywords' dont.save: no visible binding for global variable '.SavedPlots' dont.save: no visible binding for global variable 'last.warning' dont.save: no visible binding for global variable '.Traceback' find.derefs: no visible binding for global variable '.' find.documented : findo : searchfun.any: no visible binding for global variable 'searchfun' find.web: no visible binding for global variable 'generics' find.web: no visible binding for global variable 'where' find.web: no visible binding for global variable 'textcolor' find.web: no visible binding for global variable 'prune' find.web: no visible binding for global variable 'highlight' fixr.guts: no visible binding for global variable 'tracees' fixr.guts: no visible global function definition for 'mtrace' fixr.guts: no visible binding for '<<-' assignment to 'fix.list' fixr.guts: no visible binding for global variable 'fix.list' foodweb: no visible binding for global variable 'level' foodweb: no visible binding for global variable 'funmat' foodweb: no visible binding for global variable 'x' formalize.package: no visible binding for global variable 'R' formalize.package: no visible binding for global variable 'man' formalize.package: no visible global function definition for 'Rdindex' get.new.file.numbers: no visible binding for global variable '.' mlazy: no visible binding for global variable '.' mlibrary: ... may be used in an incorrect context mlocal: no visible binding for global variable 'override.answer' move: no visible binding for global variable '.' move.fix.list: no visible binding for global variable 'what' move.fix.list: no visible binding for global variable 'to' move.to.mcache: no visible binding for global variable '.' mtidy: no visible binding for global variable '.' mupdate.mcache: no visible binding for global variable '.' mvb.sys.on.exit: no visible global function definition for 'find.debug.HQ' my.index.assign: possible error in substitute(value, envir = parent.frame()): unused argument(s) (envir = parent.frame()) organize.web.display: no visible binding for global variable 'n' organize.web.display: no visible binding for global variable 'funs' organize.web.display: no visible binding for global variable 'funmat' organize.web.display: no visible binding for global variable 'minstrl' restore.all.backups: no visible global function definition for 'replace.underscores' save.mchanged: no visible binding for global variable '.' save.refdb: no visible binding for global variable '.' setup.mcache: no visible binding for global variable '.' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Codoc mismatches from documentation object 'formalize.package': formalize.package Code: function(funs = find.funs(where), package, where = 1, dir. = attr(pos.to.env(where), "path"), description.file = file.path(dir., "DESCRIPTION"), new.index = TRUE, README.goes.first = TRUE, keep.flatdoc = FALSE) Docs: function() Argument names in code not in docs: funs package where dir. description.file new.index README.goes.first keep.flatdoc Codoc mismatches from documentation object 'task.home': task.home Code: function(fname) Docs: function() Argument names in code not in docs: fname * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'foodweb': plot.foodweb S3 methods shown with full name in documentation object 'mvbutils-internal': plot.cdtree print.cdtree print.docattr print.pagertemp S3 methods shown with full name in documentation object 'mvbutils-utils': print.cat print.nullprint The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * creating mvbutils-Ex.R ... OK * checking examples ... OK * creating mvbutils-manual.tex ... OK * checking mvbutils-manual.tex ... OK