intervals-package {intervals}R Documentation

Tools for working with points and intervals

Description

Tools for working with and comparing sets of points and intervals.

Details

Index:

Intervals-class
Classes "Intervals" and "Intervals_full"
Intervals_virtual-class
Class "Intervals_virtual"
close_intervals
Re-represent integer intervals with open or closed endpoints
combine
Combine different interval matrix objects
distance_to_nearest
Compute distance to nearest position in a set of intervals
empty
Identify empty interval rows
expand
Expand or contract sets
interval_complement
Compute the complement of a set of intervals
interval_intersection
Compute the intersection of one or more sets of intervals
interval_overlap
Assess which query intervals overlap which targets
interval_union
Compute the union of intervals in one or more interval matrices
reduce
Compactly re-represent the points in a set of intervals
sgd
Yeast gene model information
size
Compute interval sizes

Author(s)

Richard Bourgon <bourgon@ebi.ac.uk>

See Also

See genomeIntervals, which extends the functionality of this package.


[Package intervals version 0.9.5 Index]