timedelay.lm {GeneReg} | R Documentation |
time delay linear model
Description
timedelay.lm is for time delay linear model.
Usage
timedelay.lm(expr,target,regulator,maxdelay=ncol(expr)*0.25,
univariate.adj.r.squared=0.8,adj.r.squared=0.9,
min.coef=0.25,output=FALSE,topdf=FALSE,
xlab='time point',ylab='log ratio')
Arguments
expr |
an expression matrix with genes in the rows, time points in the columns |
target |
target gene |
regulator |
potential regulators |
maxdelay |
max time points delay |
univariate.adj.r.squared |
the cutoff of adjusted R squared of univariate regression |
adj.r.squared |
the cutoff of adjusted R squared of multivariate regression |
min.coef |
the regression coefficient should be larger than min.coef and smaller than 1/min.coef |
output |
whether the model should be plotted |
topdf |
whether the model should be plotted into a pdf file |
xlab |
xlab of the plot |
ylab |
ylab of the plot |
[Package
GeneReg version 1.0
Index]