RidgeogramPlot {SigWinR} | R Documentation |
Basic RIDGEOGRAM plotter.
RidgeogramPlot(ridgeogram, pval=0.05, ptitle = "Ridgeogram", high.col = "red", low.col = "blue")
ridgeogram |
ridgeogram to plot. If not given it will be calculated |
pval |
the highes p-value given a color in the graph |
ptitle |
title of the graph |
high.col |
color used to show positive significant windows |
low.col |
color used to show negative significant windows |
In the plot the ridgeogram is plotted along with the sequence used as input of the graph.
Use the source of the function to compile your own Ridgeogram images.
w.c.deleeuw@uva.nl
SigWin-detector: a Grid-enabled workflow for discovering enriched windows of genomic features related to DNA sequences Márcia A Inda, Marinus F van Batenburg, Marco Roos, Adam SZ Belloum, Dmitry Vasunin, Adianto Wibisono, Antoine HC van Kampen, and Timo M Breit BMC Research Notes 2008; 1:63
Ridgeogram()
RidgeogramPlot(Ridgeogram(0.5*rnorm(124)+cos(seq(0.1,12.4,by=0.1)))); lseq <- c(rnorm(200),rnorm(100,-1),rnorm(50),rnorm(50,4.0),rnorm(100)) RidgeogramPlot(Ridgeogram(lseq),0.05,"Example ridgeogram",high.col="green",low.col="red")