A probe-level data file format used by aroma.affymetrix [DEPRECATED]


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Documentation for package ‘aroma.apd’ version 0.1.6

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aroma.apd-package Package aroma.apd
aroma.apd Package aroma.apd
cdfToApdMap Generates an APD read map file from an Affymetrix CDF file
celToApd Generates an APD file from an Affymetrix CEL file
createApd Creates an Affymetrix probe data (APD) file
findApdMap Search for APD map files in multiple directories
gtypeCelToPQ Function to immitate Affymetrix' gtype_cel_to_pq software
readApd Reads an Affymetrix probe data (APD) file
readApdHeader Reads the header of an Affymetrix probe data (APD) file
readApdMap Reads an APD probe map file
readApdRectangle Reads a spatial subset of probe-level data from Affymetrix APD files
readApdUnits Reads Affymetrix probe data (APD) as units (probesets)
updateApd Updates an Affymetrix probe data (APD) file
updateApdHeader Updates the header of an Affymetrix probe data (APD) file
updateApdUnits Updates an Affymetrix probe data (APD) file by units (probesets)
writeApd Writes an APD probe data file
writeApdMap Writes an APD probe map file