* using log directory 'd:/Rcompile/CRANpkg/local/2.8/CTFS.Rcheck' * using R version 2.8.1 beta (2008-12-12 r47183) * using session charset: ISO8859-1 * checking for file 'CTFS/DESCRIPTION' ... OK * this is package 'CTFS' version '1.00' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'CTFS' can be installed ... WARNING Found the following significant warnings: Warning: '\c' is an unrecognized escape in a character string Warning: unrecognized escape removed from "need a wood density file name or a single value for all trees\cr" Warning: '\c' is an unrecognized escape in a character string Warning: unrecognized escape removed from "invalid dbhuse value provided\cr" Warning: '\c' is an unrecognized escape in a character string Warning: unrecognized escape removed from "invalid dbhuse value provided\cr" Warning: '\c' is an unrecognized escape in a character string Warning: unrecognized escape removed from "invalid dbhuse value provided\cr" Warning: '\c' is an unrecognized escape in a character string Warning: unrecognized escape removed from "need a wood density file name or a single value for all trees\cr" See 'd:/Rcompile/CRANpkg/local/2.8/CTFS.Rcheck/00install.out' for details. * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... WARNING Warnings in file 'R/biomass.100.R': '\c' is an unrecognized escape in a character string unrecognized escape removed from "need a wood density file name or a single value for all trees\cr" '\c' is an unrecognized escape in a character string unrecognized escape removed from "invalid dbhuse value provided\cr" '\c' is an unrecognized escape in a character string unrecognized escape removed from "invalid dbhuse value provided\cr" '\c' is an unrecognized escape in a character string unrecognized escape removed from "invalid dbhuse value provided\cr" '\c' is an unrecognized escape in a character string unrecognized escape removed from "need a wood density file name or a single value for all trees\cr" * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE countdens.1quad: no visible binding for global variable 'gx' countdens.1quad: no visible binding for global variable 'gy' map: no visible binding for global variable 'gx' map: no visible binding for global variable 'gy' neighbordens.1quad: no visible binding for global variable 'sp' neighbordens.1quad: no visible binding for global variable 'gx' neighbordens.1quad: no visible binding for global variable 'gy' neighbordens.1quad: no visible binding for global variable 'countdens.fullquad' sep.species: no visible binding for global variable 'spnames' spp.randarea.range: no visible binding for global variable 'sp' spp.randarea.range: no visible binding for global variable 'gx' spp.randarea.range: no visible binding for global variable 'gy' Found possibly global 'T' or 'F' in the following functions: abund.ch.prob abundance.change countdens.1tree elev.to.list growth meantopo.quad mortality readelevdata recruitment * checking Rd files ... WARNING Rd files without 'description': spp.randarea.range.Rd These entries are required in an Rd file. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Data sets with usage in documentation object 'tst.ctfs.wsg' but not in code: wsg.ctfs * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating CTFS-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating CTFS-manual.tex ... OK * checking CTFS-manual.tex using pdflatex ... OK