* using log directory 'd:/Rcompile/CRANpkg/local/2.8/mvbutils.Rcheck' * using R version 2.8.1 beta (2008-12-12 r47183) * using session charset: ISO8859-1 * checking for file 'mvbutils/DESCRIPTION' ... OK * this is package 'mvbutils' version '2.2.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'mvbutils' can be installed ... WARNING Found the following significant warnings: missing link(s): See 'd:/Rcompile/CRANpkg/local/2.8/mvbutils.Rcheck/00install.out' for details. * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .onLoad : f: no visible binding for global variable 'blah' .onLoad: no visible binding for global variable 'tasks' .onLoad: no visible binding for global variable 'ROOT' .onLoad: no visible binding for global variable 'mvbutils' FF: no visible global function definition for 'replace.underscores' FF: no visible binding for global variable 'w' FF: no visible binding for global variable 'mods.in.packages' FF: no visible binding for global variable 'mods.in.tasks' FF: no visible binding for global variable 'tracees' FF: no visible binding for global variable 'mtrace' Save.pos: no visible global function definition for 'warn' Save.pos: no visible global function definition for 'check.for.tracees' Save.pos: no visible binding for global variable 'tracees' Save.pos: no visible binding for global variable 'mtrace' cd: no visible binding for global variable 'last.warning' cd: no visible binding for global variable '.Traceback' cd: no visible binding for global variable '.' cd..: no visible binding for global variable 'execute.Last' cd.load: no visible binding for global variable '.' cd.load: no visible binding for global variable 'execute.First' cd.write.mvb.tasks: no visible binding for global variable '.' cdfind: no visible binding for global variable '.' cdregexpr: no visible binding for global variable '.' cdtree: no visible binding for global variable '.' cdtree: no visible binding for global variable 'x' copy.ns.objects : icns : f: no visible binding for global variable 'blah' create.backups: no visible binding for global variable '.' deal.with.backups: no visible global function definition for 'warn' demlazy: no visible binding for global variable '.' discard.mouldering.backups: no visible binding for global variable 'backup.fix' dont.save: no visible binding for global variable '.SavedPlots' dont.save: no visible binding for global variable 'last.warning' dont.save: no visible binding for global variable '.Traceback' find.and.get: no visible binding for global variable 'name' find.and.get: no visible binding for global variable 'tracees' find.and.get: no visible binding for global variable 'what' find.derefs: no visible binding for global variable '.' find.docholder: no visible binding for global variable 'funs' find.documented : findo: no visible binding for global variable '.' find.web: no visible binding for global variable 'generics' find.web: no visible binding for global variable 'where' find.web: no visible binding for global variable 'textcolor' find.web: no visible binding for global variable 'prune' find.web: no visible binding for global variable 'highlight' fixr: no visible binding for global variable 'name.load.from' fixr: no visible binding for global variable 'trace.was.on' fixr: no visible global function definition for 'mtrace' fixr: no visible binding for global variable 'type.load.from' fixr: no visible binding for global variable 'package' fixr: no visible binding for global variable 'task' fixr: no visible binding for global variable 'load.from' fixr.guts: no visible binding for global variable 'tracees' fixr.guts: no visible global function definition for 'mtrace' fixup.help: no visible binding for global variable 'spath' fixup.help: no visible binding for global variable 'pkg' fixup.help: no visible binding for global variable 'ipath' fixup.help: no visible binding for global variable 'force.all.docs' fixup.help: no visible binding for global variable 'rpath' foodweb: no visible binding for global variable 'level' foodweb: no visible binding for global variable 'funmat' foodweb: no visible binding for global variable 'x' get.new.file.numbers: no visible binding for global variable '.' help2flatdoc: no visible binding for global variable 'USAGE' help2flatdoc: no visible binding for global variable 'EXAMPLES' hook.set.already: no visible binding for global variable 'prepend' internal.copy.ns.objects : f: no visible binding for global variable 'blah' load.live.package: no visible binding for '<<-' assignment to 'live.packages' load.live.package: no visible binding for global variable 'live.packages' make.NAMESPACE: no visible binding for global variable '.' methodize.USAGE: no visible binding for global variable 'overall.name' mlazy: no visible binding for global variable '.' mlibrary2: no visible binding for global variable 'tasks' mlocal: no visible binding for global variable 'override.answer' move: no visible binding for global variable '.' move.fix.list: no visible binding for global variable 'what' move.fix.list: no visible binding for global variable 'to' move.to.mcache: no visible binding for global variable '.' mp.synch: no visible binding for global variable 'exports.have.changed' mtidy: no visible binding for global variable '.' mupdate.mcache: no visible binding for global variable '.' mvb.sys.on.exit: no visible global function definition for 'find.debug.HQ' my.index.assign: possible error in substitute(value, envir = parent.frame()): unused argument(s) (envir = parent.frame()) not.for.packaging: no visible binding for global variable 'tasks' not.for.packaging: no visible binding for global variable '.Traceback' not.for.packaging: no visible binding for global variable 'last.warning' not.for.packaging: no visible binding for global variable '.SavedPlots' organize.web.display: no visible binding for global variable 'n' organize.web.display: no visible binding for global variable 'funs' organize.web.display: no visible binding for global variable 'funmat' organize.web.display: no visible binding for global variable 'minstrl' patch.package: no visible binding for global variable '.' patch.package: no visible global function definition for 'rm.from.pkg' patch.package: no visible binding for global variable 'doc' patch.package: no visible binding for global variable 'export.me' pre.install: no visible binding for global variable 'R' pre.install: no visible binding for global variable 'man' pre.install: no visible binding for global variable 'inst' pre.install: no visible binding for global variable 'src' pre.install: no visible binding for global variable '.' pre.install: no visible binding for global variable 'dll.paths' pre.install: no visible binding for global variable '.required' pre.install: no visible binding for global variable 'tasks' pre.install: no visible binding for global variable '.Traceback' pre.install: no visible binding for global variable 'last.warning' pre.install: no visible binding for global variable '.SavedPlots' pre.install: no visible binding for global variable 'task.path' pre.install: no visible binding for global variable 'env' pre.install: no visible binding for global variable 'exclude.funs' pre.install: no visible binding for global variable 'exclude.data' pre.install: no visible binding for global variable '.onAttach' reattach.placeholder: no visible global function definition for 'get.image.filename' restore.all.backups: no visible global function definition for 'replace.underscores' save.mchanged: no visible binding for global variable '.' save.refdb: no visible binding for global variable '.' setup.mcache: no visible binding for global variable '.' update.installed.dir: no visible binding for global variable 'rpath' update.installed.dir: no visible binding for global variable 'ipath' update.loaded.pkg: no visible binding for global variable 'doc' update.loaded.pkg: no visible binding for global variable 'export.me' write.sourceable.function: no visible binding for global variable 'bug.position' * checking Rd files ... OK * checking Rd cross-references ... WARNING Missing link(s) in documentation object 'mvbutils-utils.Rd': * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating mvbutils-Ex.R ... OK * checking examples ... OK * creating mvbutils-manual.tex ... OK * checking mvbutils-manual.tex using pdflatex ... OK