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| pegas-package | Population and Evolutionary Genetics Analysis System |
| amova | Analysis of Molecular Variance |
| as.loci | Conversion Among Allelic Data Classes |
| expand.genotype | Utily Functions for pegas |
| Fst | F-Statistics |
| genind2loci | Conversion Among Allelic Data Classes |
| getAlleles | Utily Functions for pegas |
| getGenotypes | Utily Functions for pegas |
| getPloidy | Utily Functions for pegas |
| haploNet | Haplotype Networks |
| haplotype | Haplotype Extraction and Frequencies |
| hw.test | Test of Hardy-Weinberg Equilibrium |
| loci2genind | Conversion Among Allelic Data Classes |
| MMD | Mismatch Distribution |
| pegas | Population and Evolutionary Genetics Analysis System |
| plot.haploNet | Haplotype Networks |
| plot.haplotype | Haplotype Extraction and Frequencies |
| plot.summary.loci | Print and Summaries of Loci Objects |
| print.amova | Analysis of Molecular Variance |
| print.loci | Print and Summaries of Loci Objects |
| print.summary.loci | Print and Summaries of Loci Objects |
| R2.test | Ramos-Onsins-Rozas Test of Neutrality |
| read.gtx | Read Genetix Data Files |
| read.loci | Read Allelic Data Files |
| summary.loci | Print and Summaries of Loci Objects |
| tajima.test | Test of the Neutral Mutation Hypothesis |
| write.loci | Write Allelic Data Files |