tajima.test {pegas} | R Documentation |
This function tests the neutral mutation hypothesis with Tajima's D.
tajima.test(x)
x |
a set of DNA sequences (object of class "DNAbin" ). |
a list with three numeric values:
D |
Tajima's D statistic. |
Pval.normal |
the p-value assuming that D follows a normal distribution with mean zero and variance one. |
Pval.beta |
the p-value assuming that D follows a beta distribution after rescaling on [0, 1] (Tajima, 1989). |
Emmanuel Paradis
Tajima, F. (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 595–595.
require(ape) data(woodmouse) tajima.test(woodmouse)