SetDataPars {FEST}R Documentation

Set input parameters for function RealStudy

Description

Set input parameters for function RealStudy.

Usage

SetDataPars(path, chrdirs = NULL, prefixInputFiles = NULL, suffixPed = ".pre",
 format = c("qtdt", "linkage"), famList = NULL, individualsTyped = NULL)

Arguments

path The data directory.
chrdirs Sub directories relative to the data directory: the data directories for the different chromosomes. A sub directory may contain data on several chromosomes. Default is NULL, i.e. no sub directories, the data files are in the directory given by 'path'.
prefixInputFiles Prefix for int input files. If prefixInputFiles=NULL, then it is assumed that there are unique input files corresponding to the default suffixes: .dat (linkage format), .dat, .freq, .map (qtdt format).
suffixPed Suffix for the pedigree files.
format 'qtdt' or 'linkage'
famList Vector: familes included in the analysis
individualsTyped Matrix: Number of rows equal number of families included in the analysis. Row i: the two individuals which relationship is to be tested

Value

chrdirs Data directories for the different chromosomes
suffixPed Suffix for the pedigree files.
format 'qtdt' or 'linkage'
fam Vector: familes included in the analysis
individualsTyped Matrix: Number of rows equal number of families included in the analysis. Row i: the two individuals which relationship is to be tested

Author(s)

Øivind Skare oivind.skare@medisin.uio.no

See Also

RealStudy


[Package FEST version 0.06 Index]