SetDataPars {FEST} | R Documentation |
Set input parameters for function RealStudy
Description
Set input parameters for function RealStudy.
Usage
SetDataPars(path, chrdirs = NULL, prefixInputFiles = NULL, suffixPed = ".pre",
format = c("qtdt", "linkage"), famList = NULL, individualsTyped = NULL)
Arguments
path |
The data directory. |
chrdirs |
Sub directories relative to the data directory: the
data directories for the different chromosomes. A sub directory
may contain data on several chromosomes. Default is NULL, i.e. no sub
directories, the data files are in the directory given by 'path'. |
prefixInputFiles |
Prefix for int input files. If prefixInputFiles=NULL, then
it is assumed that there are unique input files corresponding to the default suffixes: .dat
(linkage format), .dat, .freq, .map (qtdt format). |
suffixPed |
Suffix for the pedigree files. |
format |
'qtdt' or 'linkage' |
famList |
Vector: familes included in the analysis |
individualsTyped |
Matrix: Number of rows equal number of
families included in the analysis. Row i: the two individuals which
relationship is to be tested |
Value
chrdirs |
Data directories for the different chromosomes |
suffixPed |
Suffix for the pedigree files. |
format |
'qtdt' or 'linkage' |
fam |
Vector: familes included in the analysis |
individualsTyped |
Matrix: Number of rows equal number of
families included in the analysis. Row i: the two individuals which
relationship is to be tested |
Author(s)
Øivind Skare oivind.skare@medisin.uio.no
See Also
RealStudy
[Package
FEST version 0.06
Index]