NMF-bioc {NMF}R Documentation

Layer to use the NMF package within Bioconductor

Description

The package NMF provides an optional layer for working with common objects defined in the Bioconductor platform.

It provides:

Methods

metagenes
signature(object = "NMF"): returns the metagenes matrix according to the model defined in object. It is a simple alias to method basis.
metagenes<-
signature(object = "NMF", value = "matrix"): sets the metagenes matrix in object, and returns the updated object. It is a simple alias to method basis<-.
metaprofiles
signature(object = "NMF"): returns the metaprofiles matrix according to the model defined in object. It is a simple alias to method coef.
metaprofiles<-
signature(object = "NMF", value = "matrix"): sets the metaprofiles matrix in object, and returns the updated object. It is a simple alias to method coef<-.
nmeta
signature(object = "NMF"): returns the number of metagenes use in NMF model object. It's an alias to nbasis.

See Also

NMF, NMF-utils


[Package NMF version 0.2.4 Index]