rppa2boxplot {RPPanalyzer}R Documentation

Draw boxplots of an RPPA data set.

Description

Draws boxplots of groups of an RPPA data set and compares the expression values to a reference group.

Usage

rppa2boxplot(x, param = "tissue", wilcoxtest = FALSE, control = "normal", file = "boxplot_groups.pdf")

Arguments

x List with RPPA data with aggregated replicate spots
param character describing the phenodata that should be analyzed
wilcoxtest logical. If true, a wilcoxon test is performed on the groups found in param.
control Character describing the sample group of param that serves as reference in the wilcoxon test.
file Title of the file that will be exported.

Value

Generates a PDF file

Author(s)

Heiko Mannsperger <h.mannsperger@dkfz.de>

Examples

        library(RPPanalyzer)
        
        data(dataIII)
        dataIII_median <- sample.median(dataIII)
        rppa2boxplot(dataIII_median,param="rank",control="vx",wilcoxtest=TRUE)


[Package RPPanalyzer version 1.0.2 Index]