remove.arrays {RPPanalyzer} | R Documentation |
Remove arrays from a RPPA data list
Description
Removes arrays from the RPPA data set which are not used in following calculations.
Usage
remove.arrays(x, param = "target", arrays2rm = c("protein", "blank", "housekeeping"))
Arguments
x |
List with RPPA data set
|
param |
charater describing a row in the arraydescription (column in slidedescription file)
|
arrays2rm |
character defining the arrays to remove
|
Value
expression |
matrix with protein expression data |
expression_b |
matrix with protein expression or background data depending on the data input |
arraydescription |
data frame with feature data |
sampledescription |
data frame with pheno data |
Author(s)
Heiko Mannsperger <h.mannsperger@dkfz.de>
Examples
library(RPPanalyzer)
data(dataIII)
DT <- remove.arrays(dataIII, param = "target", arrays2rm = c("protein"))
[Package
RPPanalyzer version 1.0.2
Index]