test.correlation {RPPanalyzer} | R Documentation |
Tests for correlation between protein expression value and any continuous data using cor.test.
test.correlation(x, param = "concentration", method.cor = "kendall", method.padj = "BH", file = "correlation_plot.pdf")
x |
List containing RPPa data set |
param |
character describing the parameter |
method.cor |
character string describing the correlation |
method.padj |
character string describing the method for the p-value correction for multiple testing. |
file |
character string |
generates a pdf file
Heiko Mannsperger <h.mannsperger@dkfz.de>
For information about the argument method.cor see cor.test
,
informations about methods.padj can be found under p.adjust
library(RPPanalyzer) data(dataIII) dataIII_median <- sample.median(dataIII) test.correlation(dataIII_median,param="staging")