plotTimeCourse {RPPanalyzer}R Documentation

Draw time course from RPPA data

Description

Draws time course data from a RPPA data list and calculates a mathematical model on the time course data.

Usage

plotTimeCourse(x, tc.identifier = c("sample", "stimulation", "inhibition", "stim_concentration"),
plot.split = "experiment", file = "splineplot.pdf", arrays2rm = c("protein", "Blank"), plotformat = "rawdata")

Arguments

x List containing RPPA data set
tc.identifier character string describing the column names in the sampledescription that identifies the individual time course experiments
plot.split character string describing the column names in sampledescription that defines the argument that devides between different plots
file character string for the name of the exported file
arrays2rm character strings identifying the targets that should be from the time course plots
plotformat character string defining the plot type: rawdata, splines,both.

Details

This function plots RPPA time course experiments from data sets with aggregated replicate spots. A column time containing numeric values is required in the sampledescription file. One or several column in the sampledescription file should be able to indentify the individual experiments described in argument tc.identifier. One column should provide a parameter plot.split to split the whole data set into different comparable time courses that have to be plotted together.

Value

generates a PDF file

Author(s)

Heiko Mannsperger <h.mannsperger@dkfz.de

Examples

        library(RPPanalyzer)
        data(dataII)
        plotTimeCourse(dataII,tc.identifier=c("sample","stimulation","stim_concentration","inhibition")
               ,plot.split="experiment",file="output_ptc_x.pdf",plotformat="both")


[Package RPPanalyzer version 1.0.2 Index]