remove.arrays {RPPanalyzer}R Documentation

Remove arrays from a RPPA data list

Description

Removes arrays from the RPPA data set which are not used in following calculations.

Usage

remove.arrays(x, param = "target", arrays2rm = c("protein", "blank", "housekeeping"))

Arguments

x List with RPPA data set
param charater describing a row in the arraydescription (column in slidedescription file)
arrays2rm character defining the arrays to remove

Value

expression matrix with protein expression data
expression_b matrix with protein expression or background data depending on the data input
arraydescription data frame with feature data
sampledescription data frame with pheno data

Author(s)

Heiko Mannsperger <h.mannsperger@dkfz.de>

Examples

        
library(RPPanalyzer)
data(dataIII)
DT <- remove.arrays(dataIII, param = "target", arrays2rm = c("protein"))
 

[Package RPPanalyzer version 1.0.2 Index]