plotTimeCourse {RPPanalyzer} | R Documentation |
Draws time course data from a RPPA data list and calculates a mathematical model on the time course data.
plotTimeCourse(x, tc.identifier = c("sample", "stimulation", "inhibition", "stim_concentration"), plot.split = "experiment", file = "splineplot.pdf", arrays2rm = c("protein", "Blank"), plotformat = "rawdata")
x |
List containing RPPA data set |
tc.identifier |
character string describing the column names in the sampledescription that identifies the individual time course experiments |
plot.split |
character string describing the column names in sampledescription that defines the argument that devides between different plots |
file |
character string for the name of the exported file |
arrays2rm |
character strings identifying the targets that should be from the time course plots |
plotformat |
character string defining the plot type: rawdata ,
splines ,both . |
This function plots RPPA time course experiments from data sets with aggregated
replicate spots. A column time
containing numeric values is required in the sampledescription file.
One or several column in the sampledescription file should be
able to indentify the individual experiments described in argument tc.identifier
.
One column should provide a parameter plot.split
to split the whole data set into different
comparable time courses that have to be plotted together.
generates a PDF file
Heiko Mannsperger <h.mannsperger@dkfz.de
library(RPPanalyzer) data(dataII) plotTimeCourse(dataII,tc.identifier=c("sample","stimulation","stim_concentration","inhibition") ,plot.split="experiment",file="output_ptc_x.pdf",plotformat="both")