haplo-class {SHARE} | R Documentation |
Haplotype Estimation Set
Description
A class for storing haplotype estimation information.
Objects from the Class
Objects can be created by calls of the form new("haplo", ...)
.
Slots
hap1
:- the code of first haplotype of each subject. This is from
the "hap1code" component in the result of haplo.em funciton.
hap2
:- the code of first haplotype of each subject. This is from
the "hap2code" component in the result of haplo.em funciton.
poolHapPair
- Subject IDs. This is from the "subj.id"
component in the result of haplo.em funciton.
nPosHapPair
:- vector for the count of haplotype pairs that
map to each subject's marker genotypes. This is from the "nreps"
component in the result of haplo.em funciton.
post
:- vector of posterior probabilities of pairs of haplotypes
for a person, given their marker phenotypes. This is from the "post"
component in the result of haplo.em funciton.
haploSeq
:- Object of class
"data.frame"
to store
the unique haplotype sequences. This is from the "haplotype"
component in the result of haplo.em funciton.
haploFreq
:- Object of class
"vector"
to store
the MLE's of haplotype probabilities. This is from
the "hap.prob" component in the result of haplo.em funciton.
pheno
:- Object of class
"data.frame"
to store
the phenotype information
Extends
Class "haploSet"
, directly.
Author(s)
Ting-Yuan Liu
See Also
haplo
, haploSet
Examples
showClass("haplo")
[Package
SHARE version 1.0.4
Index]