haplo-class {SHARE}R Documentation

Haplotype Estimation Set

Description

A class for storing haplotype estimation information.

Objects from the Class

Objects can be created by calls of the form new("haplo", ...).

Slots

hap1:
the code of first haplotype of each subject. This is from the "hap1code" component in the result of haplo.em funciton.
hap2:
the code of first haplotype of each subject. This is from the "hap2code" component in the result of haplo.em funciton.
poolHapPair
Subject IDs. This is from the "subj.id" component in the result of haplo.em funciton.
nPosHapPair:
vector for the count of haplotype pairs that map to each subject's marker genotypes. This is from the "nreps" component in the result of haplo.em funciton.
post:
vector of posterior probabilities of pairs of haplotypes for a person, given their marker phenotypes. This is from the "post" component in the result of haplo.em funciton.
haploSeq:
Object of class "data.frame" to store the unique haplotype sequences. This is from the "haplotype" component in the result of haplo.em funciton.
haploFreq:
Object of class "vector" to store the MLE's of haplotype probabilities. This is from the "hap.prob" component in the result of haplo.em funciton.
pheno:
Object of class "data.frame" to store the phenotype information

Extends

Class "haploSet", directly.

Author(s)

Ting-Yuan Liu

See Also

haplo, haploSet

Examples

showClass("haplo")

[Package SHARE version 1.0.4 Index]