InFile {SpectralGEM}R Documentation

Generate a text file

Description

The function generates a text file that contains the parameters needed in the main fortran program and saves it in the current directory.

Usage

InFile(identifier="smal",stage="1",directory="./",
                    MMfile="MMprime.txt",excludefile="exclude.txt",
                    idlength=8,mincluster=10,logtype=0,
                    mdim=-1,msnp=-1,
                    outfile="matching_input.txt")

Arguments

identifier Must be 4-letters long.
stage Must be 1-letter long.
directory The directory where the files will be generated.
MMfile The MMprime matrix file name.
excludefile The name of the file where the outliers have been or will be written.
idlength The number of letters the longest sample name has.
mincluster The smallest cluster required when do clustering, must be at least 5.
logtype The type of log information output to the log file: 0=limited, 2=lots.
mdim The maximum number of eigenvalues to print to the output file. The default is set at -1, which prints out every eigenvalues.
msnp The number of SNPs to be used in determine the threshold for the significant eigenvalues. The default is set at -1, which the program estimates the value.
outfile The name of the output file.

Details

The function generates a text file with one column which contains all the parameters needed. The parameters need to be in the right order in order for the main fortran program to use.

Value

A text file is saved in the current directory.

Author(s)

Ann Lee, Diana Luca, Bert Klei, Bernie Devlin, and Kathryn Roeder

Maintainer: Jing Wu jwu@stat.cmu.edu

References

http://wpicr.wpic.pitt.edu/WPICCompGen/Spectral-GEM/GEM+.htm

See Also

http://wpicr.wpic.pitt.edu/WPICCompGen/Spectral-GEM/matching_input.txt


[Package SpectralGEM version 1.0 Index]