ProPlot {aCGH.Spline} | R Documentation |
Produce a figure showing the log2 ratio sorted by genomic location.
ProPlot(x, pch=46, col="black", ylim=c(-3,3), xlim=c(0,length(x[,1])), xlab="Index", ylab="log2 ratio", main="Profile Plot")
x |
- ".temp" formatted data structure. |
pch |
- the point character to use defaults to 46. |
col |
- the point color to use, defaults to "black". |
xlim |
- the x-axis limits. |
ylim |
- the y-axis limits defaults to c(-3,3). |
xlab |
- the label for the x-axis. |
ylab |
- the label for the y-axis. |
main |
- the main title for the plot. |
Provides an overall picture of array data.
Figure showing log2 ratio sorted by genomic location.
Tomas William Fitzgerald
chr = rnorm(1000,1,0) for (x in 2:24) { chr = c(chr, rnorm(1000,x,0)) } mat = matrix(ncol=7, nrow=length(chr)) mat[,1] = rnorm(length(chr),1000,150) mat[,2] = rnorm(length(chr),800,180) mat[,3] = chr mat[,4] = seq(1,length(chr), 1) mat[,5] = seq(1,length(chr), 1) mat[,6] = 0 mat[,7] = 0 ProPlot(mat)