cdfToApdMap {aroma.apd} | R Documentation |
Generates an APD read map file from an Affymetrix CDF file.
## Default S3 method: cdfToApdMap(filename, mapType=NULL, mapFile=NULL, mapPath=NULL, ..., verbose=FALSE)
filename |
The pathname of the CDF file. |
mapType |
A character string naming the type of the map.
If NULL , the chip type will be used. |
mapFile |
The filename of the resulting APD map file. If NULL ,
the map type with filename extension apm will be used. |
mapPath |
An optional path where to the map file will be stored. |
... |
Additional arguments passed to
readCdfUnitsWriteMap , e.g. units . |
verbose |
A Verbose object. |
Returns (invisibly) a list
structure with elements:
pathname |
The pathname of the generated APD map file. |
mapType |
The map type character string. |
chipType |
The chip type character string. |
readMap |
The generated read map integer vector . |
Henrik Bengtsson (http://www.braju.com/R/)
To read an APD map file, see readApdMap
().