RawSequenceReads {aroma.core}R Documentation

The RawSequenceReads class

Description

Package: aroma.core
Class RawSequenceReads

Object
~~|
~~+--RawGenomicSignals
~~~~~~~|
~~~~~~~+--RawSequenceReads

Directly known subclasses:

public static class RawSequenceReads
extends RawGenomicSignals

Usage

RawSequenceReads(x=NULL, y=rep(1, length(x)), ...)

Arguments

x An integer vector of length J specifying the read positions.
y An (optional) integer vector of length J specifying the number of reads at each position. Default is one read per position.
... Arguments passed to RawGenomicSignals.

Fields and Methods

Methods:
binnedSums -
extractRawCopyNumbers -
nbrOfReads -
plot -

Methods inherited from RawGenomicSignals:
addBy, addLocusFields, append, applyBinaryOperator, as.data.frame, binnedSmoothing, divideBy, estimateStandardDeviation, extractDataForSegmentation, extractRegion, extractSubset, gaussianSmoothing, getChromosome, getLocusFields, getName, getPositions, getSigma, getSignals, getWeights, getXScale, getXY, getYScale, hasWeights, kernelSmoothing, lines, multiplyBy, nbrOfLoci, plot, points, setLocusFields, setName, setSigma, setWeights, setXScale, setYScale, signalRange, sort, subtractBy, summary, xMax, xMin, xRange, xSeq, yMax, yMin, yRange

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)


[Package aroma.core version 1.4.0 Index]