ChromosomalModel {aroma.core} | R Documentation |
Package: aroma.core
Class ChromosomalModel
Object
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ChromosomalModel
Directly known subclasses:
CbsModel, CopyNumberChromosomalModel, CopyNumberSegmentationModel, GladModel, HaarSegModel, RawCopyNumberModel
public abstract static class ChromosomalModel
extends Object
This abstract class represents a chromosomal model.
ChromosomalModel(cesTuple=NULL, tags="*", genome="Human", ...)
cesTuple |
A AromaMicroarrayDataSetTuple . |
tags |
A character vector of tags. |
genome |
A character string specifying what genome is process. |
... |
Not used. |
Methods:
clearCache | - | |
fit | - | |
getAlias | - | |
getChipType | Gets a label for all chip types merged. | |
getChipTypes | - | |
getChromosomes | Gets the chromosomes available. | |
getFullName | - | |
getFullNames | - | |
getGenome | - | |
getListOfAromaUgpFiles | - | |
getName | - | |
getNames | Gets the names of the arrays. | |
getParentPath | - | |
getPath | - | |
getRootPath | - | |
getSets | - | |
getTags | - | |
indexOf | - | |
nbrOfArrays | Gets the number of arrays. | |
nbrOfChipTypes | Gets the number of chip types. | |
setAlias | - | |
setGenome | - |
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
This class requires genome information annotation files for every chip type.
Henrik Bengtsson (http://www.braju.com/R/)