RawSequenceReads {aroma.core} | R Documentation |
Package: aroma.core
Class RawSequenceReads
Object
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RawGenomicSignals
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RawSequenceReads
Directly known subclasses:
public static class RawSequenceReads
extends RawGenomicSignals
RawSequenceReads(x=NULL, y=rep(1, length(x)), ...)
x |
An integer vector of length J specifying the read positions. |
y |
An (optional) integer vector of length J specifying the number of reads at each position. Default is one read per position. |
... |
Arguments passed to RawGenomicSignals . |
Methods:
binnedSums | - | |
extractRawCopyNumbers | - | |
nbrOfReads | - | |
plot | - |
Methods inherited from RawGenomicSignals:
addBy, addLocusFields, append, applyBinaryOperator, as.data.frame, binnedSmoothing, divideBy, estimateStandardDeviation, extractDataForSegmentation, extractRegion, extractSubset, gaussianSmoothing, getChromosome, getLocusFields, getName, getPositions, getSigma, getSignals, getWeights, getXScale, getXY, getYScale, hasWeights, kernelSmoothing, lines, multiplyBy, nbrOfLoci, plot, points, setLocusFields, setName, setSigma, setWeights, setXScale, setYScale, signalRange, sort, subtractBy, summary, xMax, xMin, xRange, xSeq, yMax, yMin, yRange
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)