AromaUnitFracBCnBinarySet {aroma.core} | R Documentation |
Package: aroma.core
Class AromaUnitFracBCnBinarySet
Object
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FullNameInterface
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GenericDataFileSet
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GenericTabularFileSet
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AromaTabularBinarySet
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AromaUnitSignalBinarySet
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AromaUnitFracBCnBinarySet
Directly known subclasses:
public static class AromaUnitFracBCnBinarySet
extends AromaUnitSignalBinarySet
An AromaUnitFracBCnBinarySet object represents a set of
AromaUnitFracBCnBinaryFile
s with identical chip types.
AromaUnitFracBCnBinarySet(...)
... |
Arguments passed to AromaUnitSignalBinarySet . |
The term "allele B fraction" is also know as "allele B frequency", which was coined by Peiffer et al. (2006). Note that the term "frequency" is a bit misleading since it is not a frequency in neither the statistical nor the population sense, but rather only proportion relative to the total amount of allele A and allele B signals, which is calculated for each sample independently.
Methods:
byName | - | |
exportFracBDiffSet | - |
Methods inherited from AromaUnitSignalBinarySet:
byName, findByName, getAromaUgpFile, getChipType, getPlatform, validate
Methods inherited from GenericTabularFileSet:
calculateAverageColumnAcrossFiles, extractMatrix
Methods inherited from GenericDataFileSet:
append, appendFiles, appendFullNamesTranslator, appendFullNamesTranslatorByfunction, appendFullNamesTranslatorBylist, appendFullNamesTranslatorByNULL, as.list, byName, byPath, clearCache, clearFullNamesTranslator, copyTo, equals, extract, findByName, fromFiles, getAlias, getDefaultFullName, getFile, getFileClass, getFileSize, getFullNames, getNames, getPath, getPathnames, hasFile, indexOf, lapply, nbrOfFiles, sapply, seq, setAlias, setFullNamesTranslator, update2, updateFullName, updateFullNames, validate
Methods inherited from FullNameInterface:
appendFullNameTranslator, appendFullNameTranslatorBycharacter, appendFullNameTranslatorByfunction, appendFullNameTranslatorBylist, appendFullNameTranslatorByNULL, clearFullNameTranslator, clearListOfFullNameTranslators, getDefaultFullName, getFullName, getFullNameTranslator, getListOfFullNameTranslators, getName, getTags, hasTag, hasTags, setFullName, setFullNameTranslator, setListOfFullNameTranslators, setName, setTags, updateFullName
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)
[1] Peiffer et al., High-resolution genomic profiling of
chromosomal aberrations using Infinium whole-genome genotyping,
Genome Res, 2006.