* using log directory 'd:/Rcompile/CRANpkg/local/2.9/PBSadmb.Rcheck' * using R version 2.9.2 Patched (2009-09-02 r49531) * using session charset: ISO8859-1 * checking for file 'PBSadmb/DESCRIPTION' ... OK * this is package 'PBSadmb' version '0.61.44' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'PBSadmb' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .chooseCols: no visible binding for global variable 'prefix' .win.appendLog: no visible binding for global variable 'prefix' .win.checkADopts: no visible binding for global variable 'admpath' .win.checkADopts: no visible binding for global variable 'gccpath' .win.checkADopts: no visible binding for global variable 'editor' .win.cleanAD: no visible binding for global variable 'prefix' .win.compAD: no visible binding for global variable 'prefix' .win.compAD: no visible binding for global variable 'raneff' .win.compAD: no visible binding for global variable 'safe' .win.convAD: no visible binding for global variable 'prefix' .win.convAD: no visible binding for global variable 'raneff' .win.editAD: no visible binding for global variable 'prefix' .win.linkAD: no visible binding for global variable 'prefix' .win.linkAD: no visible binding for global variable 'raneff' .win.linkAD: no visible binding for global variable 'safe' .win.makeAD: no visible binding for global variable 'prefix' .win.makeAD: no visible binding for global variable 'raneff' .win.makeAD: no visible binding for global variable 'safe' .win.makeADopts: no visible binding for global variable 'admpath' .win.makeADopts: no visible binding for global variable 'gccpath' .win.makeADopts: no visible binding for global variable 'editor' .win.plotMC: no visible binding for global variable 'prefix' .win.plotMC: no visible binding for global variable 'pthin' .win.plotMC: no visible binding for global variable 'PBSadmb' .win.readADopts: no visible binding for global variable 'optfile' .win.readRep: no visible binding for global variable 'toView' .win.readRep: no visible binding for global variable 'prefix' .win.readRep: no visible binding for global variable 'pltView' .win.run: no visible binding for global variable 'runType' .win.runAD: no visible binding for global variable 'prefix' .win.runAD: no visible binding for global variable 'argvec' .win.runAD: no visible binding for global variable 'logfile' .win.runAD: no visible binding for global variable 'add' .win.runAD: no visible binding for global variable 'verbose' .win.runMC: no visible binding for global variable 'prefix' .win.runMC: no visible binding for global variable 'nsims' .win.runMC: no visible binding for global variable 'nthin' .win.runMC: no visible binding for global variable 'logfile' .win.runMC: no visible binding for global variable 'add' .win.runMC: no visible binding for global variable 'verbose' .win.runMC: no visible binding for '<<-' assignment to 'PBSadmb' .win.runMC: no visible binding for global variable 'PBSadmb' .win.showADargs: no visible binding for global variable 'prefix' .win.showGUIargs: no visible binding for global variable 'runType' .win.showGUIargs: no visible binding for global variable 'nsims' .win.showGUIargs: no visible binding for global variable 'nthin' .win.showGUIargs: no visible binding for global variable 'argvec' .win.startLog: no visible binding for global variable 'prefix' .win.viewRep: no visible binding for global variable 'prefix' .win.writeADopts: no visible binding for global variable 'optfile' parseCmd: no visible binding for global variable 'ADMBcmd' * checking Rd files ... OK * checking Rd files against version 2 parser ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking examples ... OK * checking PDF version of manual ... OK