* using log directory 'd:/Rcompile/CRANpkg/local/2.9/celsius.Rcheck' * using R version 2.9.2 (2009-08-24) * using session charset: ISO8859-1 * checking for file 'celsius/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'celsius' version '1.0.7' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'celsius' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd files against version 2 parser ... WARNING Warning in parse_Rd("./man/celsiusServer.Rd", encoding = "unknown") : newline within quoted string at celsiusServer.Rd:18 *** error on file ./man/celsiusServer.Rd Error in parse_Rd("./man/celsiusServer.Rd", encoding = "unknown") : ./man/celsiusServer.Rd:58:1: unexpected '}' 57: } 58: } ^ problem found in 'celsiusServer.Rd' * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking examples ... ERROR Running examples in 'celsius-Ex.R' failed. The error most likely occurred in: > ### * celsius > > flush(stderr()); flush(stdout()) > > ### Name: celsius > ### Title: Retrieve Affymetrix microarray measurements and metadata from > ### Celsius > ### Aliases: celsius celsius-package > ### Keywords: data > > ### ** Examples > > > #first make an instance of a celsius Server object. > celsius = new( "celsiusServer", + celsiusUrl = "http://celsius.genomics.ctrl.ucla.edu" ); > > #list all of the platforms supported by the server > platformTable = getPlatformData( celsius ); Warning in file(file, "r") : cannot open: HTTP status was '502 Bad Gateway' Error in file(file, "r") : cannot open the connection Calls: getPlatformData -> read.delim -> read.table -> file Execution halted