* using log directory 'd:/Rcompile/CRANpkg/local/2.9/fit4NM.Rcheck' * using R version 2.9.2 Patched (2009-09-02 r49531) * using session charset: ISO8859-1 * checking for file 'fit4NM/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'fit4NM' version '1.0.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'fit4NM' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE fit4NM : OpenDataFile: no visible binding for '<<-' assignment to 'file.data' fit4NM : OpenDataFile: no visible binding for global variable 'file.data' fit4NM : OpenDataFile: no visible binding for '<<-' assignment to 'D.data' fit4NM : OpenDataFile: no visible binding for global variable 'D.data' fit4NM : OpenControlFile: no visible binding for '<<-' assignment to 'file.ctl' fit4NM : OpenControlFile: no visible binding for global variable 'file.ctl' fit4NM : OpenControlFile: no visible binding for '<<-' assignment to 'Current.CTL' fit4NM : OpenControlFile: no visible binding for '<<-' assignment to 'NONMEM.CTL' fit4NM : OpenControlFile: no visible binding for '<<-' assignment to 'Var.Name' fit4NM : OpenControlFile: no visible binding for global variable 'Var.Name' fit4NM : OpenControlFile : : no visible binding for global variable 'Var.Name' fit4NM : OpenControlFile : : no visible binding for '<<-' assignment to 'Var.Prop.Keep' fit4NM : OpenControlFile : : no visible binding for '<<-' assignment to 'DV.id' fit4NM : OpenControlFile : : no visible binding for global variable 'Var.Prop.Keep' fit4NM : OpenControlFile : : no visible binding for '<<-' assignment to 'ID.id' fit4NM : OpenControlFile : : no visible binding for '<<-' assignment to 'TIME.id' fit4NM : OpenControlFile : : no visible binding for '<<-' assignment to 'AMT.id' fit4NM : OpenControlFile : : no visible binding for '<<-' assignment to 'MDV.id' fit4NM : Editor: no visible binding for global variable 'Current.CTL' fit4NM : Editor : : no visible binding for '<<-' assignment to 'Current.CTL' fit4NM : XY.plot : updatePlot: no visible binding for global variable 'D.data' fit4NM : XY.plot : updatePlot: no visible binding for global variable 'Var.Name' fit4NM : XY.plot : saveData: no visible binding for global variable 'D.data' fit4NM : XY.plot : saveData: no visible binding for global variable 'ID.id' fit4NM : XY.plot : saveData: no visible binding for global variable 'Var.Name' fit4NM : XY.plot: no visible binding for global variable 'Var.Name' fit4NM : ID.plot: no visible binding for global variable 'D.data' fit4NM : ID.plot: no visible binding for global variable 'ID.id' fit4NM : ID.plot: no visible binding for global variable 'Var.Prop.Keep' fit4NM : ID.plot: no visible binding for global variable 'Var.Name' fit4NM : ID.plot : updatePlot: no visible binding for global variable 'D.data' fit4NM : ID.plot : updatePlot: no visible binding for global variable 'TIME.id' fit4NM : ID.plot : updatePlot: no visible binding for global variable 'DV.id' fit4NM : ID.plot : updatePlot: no visible binding for global variable 'ID.id' fit4NM : ID.plot : Plot1: no visible binding for global variable 'D.data' fit4NM : ID.plot : Plot1: no visible binding for global variable 'TIME.id' fit4NM : ID.plot : Plot1: no visible binding for global variable 'DV.id' fit4NM : ID.plot : Plot1: no visible binding for global variable 'ID.id' fit4NM : ID.plot : Plot2: no visible binding for global variable 'D.data' fit4NM : ID.plot : Plot2: no visible binding for global variable 'TIME.id' fit4NM : ID.plot : Plot2: no visible binding for global variable 'DV.id' fit4NM : ID.plot : Plot2: no visible binding for global variable 'ID.id' fit4NM : PK.plot: no visible binding for global variable 'Var.Prop.Keep' fit4NM : PK.plot: no visible binding for global variable 'D.data' fit4NM : PK.plot: no visible binding for global variable 'ID.id' fit4NM : PK.plot: no visible binding for global variable 'Var.Name' fit4NM : PK.plot : updatePlot: no visible binding for global variable 'D.data' fit4NM : PK.plot : updatePlot: no visible binding for global variable 'Var.Name' fit4NM : PK.plot : updatePlot: no visible binding for global variable 'ID.id' fit4NM : PK.plot : updatePlot: no visible binding for global variable 'DV.id' fit4NM : PK.plot : updatePlot: no visible binding for global variable 'TIME.id' fit4NM : PK.plot : saveData: no visible binding for global variable 'D.data' fit4NM : PK.plot : saveData: no visible binding for global variable 'Var.Name' fit4NM : PK.plot : saveData: no visible binding for global variable 'ID.id' fit4NM : PD.plot : updatePlot: no visible binding for global variable 'D.data' fit4NM : PD.plot : updatePlot: no visible binding for global variable 'ID.id' fit4NM : PD.plot : saveData: no visible binding for global variable 'D.data' fit4NM : PD.plot : saveData: no visible binding for global variable 'ID.id' fit4NM : PD.plot: no visible binding for global variable 'Var.Name' fit4NM : parsing: no visible binding for global variable 'Current.CTL' fit4NM : parsing: no visible binding for global variable 'Var.Name' fit4NM : parsing: no visible binding for global variable 'RunID' fit4NM : parsing: no visible binding for '<<-' assignment to 'N.theta' fit4NM : parsing: no visible binding for '<<-' assignment to 'N.eta' fit4NM : parsing: no visible binding for '<<-' assignment to 'N.eps' fit4NM : parsing: no visible binding for global variable 'N.eta' fit4NM : parsing: no visible binding for '<<-' assignment to 'Current.CTL' fit4NM : add.CTL: no visible binding for global variable 'Current.CTL' fit4NM : add.CTL: no visible binding for '<<-' assignment to 'INTER.flag' fit4NM : add.CTL: no visible binding for '<<-' assignment to 'FO.flag' fit4NM : add.CTL: no visible binding for '<<-' assignment to 'FOCE.flag' fit4NM : add.CTL: no visible binding for '<<-' assignment to 'POSTHOC.flag' fit4NM : add.CTL: no visible binding for global variable 'N.eta' fit4NM : add.CTL: no visible binding for global variable 'N.eps' fit4NM : add.CTL: no visible binding for global variable 'RunID' fit4NM : add.CTL: no visible binding for '<<-' assignment to 'NONMEM.CTL' fit4NM : rm.CTL: no visible binding for '<<-' assignment to 'ETA' fit4NM : rm.CTL: no visible binding for global variable 'RunID' fit4NM : rm.CTL: no visible binding for '<<-' assignment to 'G.p' fit4NM : rm.CTL: no visible binding for global variable 'N.eta' fit4NM : rm.CTL: no visible binding for '<<-' assignment to 'H.p' fit4NM : rm.CTL: no visible binding for global variable 'N.eps' fit4NM : rm.CTL: no visible binding for global variable 'NONMEM.CTL' fit4NM : rm.CTL: no visible binding for global variable 'Current.CTL' fit4NM : rm.CTL: no visible binding for '<<-' assignment to 'NONMEM.CTL' fit4NM : NONMEM.output: no visible binding for '<<-' assignment to 'OBJ' fit4NM : NONMEM.output: no visible binding for '<<-' assignment to 'THETA' fit4NM : NONMEM.output: no visible binding for '<<-' assignment to 'seTHETA' fit4NM : NONMEM.output: no visible binding for '<<-' assignment to 'OMEGA' fit4NM : NONMEM.output: no visible binding for global variable 'N.eta' fit4NM : NONMEM.output: no visible binding for '<<-' assignment to 'seOMEGA' fit4NM : NONMEM.output: no visible binding for '<<-' assignment to 'SIGMA' fit4NM : NONMEM.output: no visible binding for global variable 'N.eps' fit4NM : NONMEM.output: no visible binding for '<<-' assignment to 'seSIGMA' fit4NM : NONMEM.output: no visible binding for global variable 'RunID' fit4NM : NONMEM.output: no visible binding for '<<-' assignment to 'G' fit4NM : NONMEM.output: no visible binding for '<<-' assignment to 'H' fit4NM : NONMEM.output: no visible binding for '<<-' assignment to 'NM.FIT' fit4NM : NONMEM.output: no visible binding for global variable 'NM.FIT' fit4NM : NONMEM.output: no visible binding for global variable 'G' fit4NM : NONMEM.output: no visible binding for global variable 'H' fit4NM : NONMEM.output: no visible binding for global variable 'OMEGA' fit4NM : NONMEM.output: no visible binding for global variable 'SIGMA' fit4NM : NONMEM.output: no visible binding for global variable 'FO.flag' fit4NM : NONMEM.output: no visible binding for global variable 'G.p' fit4NM : NONMEM.output: no visible binding for global variable 'H.p' fit4NM : NONMEM.output: no visible binding for global variable 'ETA' fit4NM : NONMEM.output: no visible binding for global variable 'INTER.flag' fit4NM : NONMEM.output: no visible binding for global variable 'seTHETA' fit4NM : NONMEM.output: no visible binding for global variable 'THETA' fit4NM : NONMEM.output: no visible binding for global variable 'seOMEGA' fit4NM : NONMEM.output: no visible binding for global variable 'seSIGMA' fit4NM : NONMEM.output: no visible binding for global variable 'N.theta' fit4NM : NONMEM.output: no visible binding for '<<-' assignment to 'AIC.nm' fit4NM : NONMEM.output: no visible binding for global variable 'OBJ' fit4NM : NONMEM.output: no visible binding for '<<-' assignment to 'BIC.nm' fit4NM : NONMEM.output: no visible binding for '<<-' assignment to 'Output.Table' fit4NM : NONMEM.output: no visible binding for '<<-' assignment to 'EST.tot' fit4NM : parsing.LST: no visible binding for global variable 'D.LST' fit4NM : parsing.LST: no visible binding for '<<-' assignment to 'Cov.desc' fit4NM : parsing.LST: no visible binding for '<<-' assignment to 'Min.desc' fit4NM : runNONMEM : : no visible binding for '<<-' assignment to 'Model.desc' fit4NM : runNONMEM: no visible binding for '<<-' assignment to 'RunID' fit4NM : runNONMEM: no visible binding for global variable 'RunID' fit4NM : runNONMEM: no visible binding for '<<-' assignment to 'Cur.Run' fit4NM : runNONMEM: no visible binding for global variable 'Cur.Run' fit4NM : runNONMEM: no visible binding for global variable 'NONMEM.CTL' fit4NM : runNONMEM: no visible binding for global variable 'D.data' fit4NM : runNONMEM: no visible binding for '<<-' assignment to 'D.LST' fit4NM : runNONMEM: no visible binding for global variable 'D.LST' fit4NM : runNONMEM: no visible binding for global variable 'OBJ' fit4NM : runNONMEM: no visible binding for global variable 'AIC.nm' fit4NM : runNONMEM: no visible binding for global variable 'BIC.nm' fit4NM : runNONMEM: no visible binding for global variable 'Model.desc' fit4NM : runNONMEM: no visible binding for global variable 'Min.desc' fit4NM : runNONMEM: no visible binding for global variable 'Cov.desc' fit4NM : runNONMEM: no visible binding for '<<-' assignment to 'D.TAB' fit4NM : runNONMEM: no visible binding for global variable 'NM.FIT' fit4NM : runNONMEM: no visible binding for global variable 'D.TAB' fit4NM : runNONMEM: no visible binding for '<<-' assignment to 'PRED.id' fit4NM : runNONMEM: no visible binding for '<<-' assignment to 'RES.id' fit4NM : runNONMEM: no visible binding for '<<-' assignment to 'WRES.id' fit4NM : runNONMEM: no visible binding for global variable 'EST.tot' fit4NM : runNONMEM: no visible binding for global variable 'G' fit4NM : runNONMEM: no visible binding for global variable 'H' fit4NM : runNONMEM: no visible binding for global variable 'Output.Table' fit4NM : show.parameters: no visible binding for global variable 'EST.tot' fit4NM : show.GandH: no visible binding for global variable 'D.data' fit4NM : show.GandH: no visible binding for global variable 'G' fit4NM : show.GandH: no visible binding for global variable 'H' fit4NM : show.GandH: no visible binding for global variable 'N.eta' fit4NM : show.GandH: no visible binding for global variable 'N.eps' fit4NM : show.FittedResidual: no visible binding for global variable 'Output.Table' fit4NM : show.LST: no visible binding for global variable 'RunID' fit4NM : DVvsPRED.plot : updatePlot: no visible binding for global variable 'Output.Table' fit4NM : DVvsPRED.plot: no visible binding for global variable 'NM.FIT' fit4NM : DVvsRES.plot : updatePlot: no visible binding for global variable 'Output.Table' fit4NM : DVvsRES.plot : Plot1: no visible binding for global variable 'Output.Table' fit4NM : DVvsRES.plot : Plot1: no visible binding for global variable 'FO.flag' fit4NM : DVvsRES.plot: no visible binding for global variable 'FO.flag' fit4NM : TIMEvsRES.plot : updatePlot: no visible binding for global variable 'Output.Table' fit4NM : TIMEvsRES.plot: no visible binding for global variable 'FO.flag' fit4NM : TIMEvsDVandPRED.plot: no visible binding for global variable 'D.data' fit4NM : TIMEvsDVandPRED.plot: no visible binding for global variable 'ID.id' fit4NM : TIMEvsDVandPRED.plot : updatePlot: no visible binding for global variable 'Output.Table' fit4NM : TIMEvsDVandPRED.plot : Plot1: no visible binding for global variable 'Output.Table' fit4NM : TIMEvsDVandPRED.plot : Plot1: no visible binding for global variable 'TIME.id' fit4NM : TIMEvsDVandPRED.plot : Plot1: no visible binding for global variable 'DV.id' fit4NM : TIMEvsDVandPRED.plot : Plot1: no visible binding for global variable 'ID.id' fit4NM : TIMEvsDVandPRED.plot : Plot2: no visible binding for global variable 'Output.Table' fit4NM : TIMEvsDVandPRED.plot : Plot2: no visible binding for global variable 'TIME.id' fit4NM : TIMEvsDVandPRED.plot : Plot2: no visible binding for global variable 'DV.id' fit4NM : TIMEvsDVandPRED.plot : Plot2: no visible binding for global variable 'ID.id' fit4NM : EBEvsCOV.plot: no visible binding for global variable 'N.eta' fit4NM : EBEvsCOV.plot: no visible binding for global variable 'Var.Prop.Keep' fit4NM : EBEvsCOV.plot: no visible binding for global variable 'D.data' fit4NM : EBEvsCOV.plot: no visible binding for global variable 'ETA' fit4NM : EBEvsCOV.plot: no visible binding for global variable 'Var.Name' fit4NM : Boot.ctl: no visible binding for global variable 'Current.CTL' fit4NM : Boot.ctl: no visible binding for '<<-' assignment to 'Boot.CTL' fit4NM : show.BTsummary: no visible binding for global variable 'THETA' fit4NM : show.BTsummary: no visible binding for global variable 'OMEGA' fit4NM : show.BTsummary: no visible binding for global variable 'SIGMA' fit4NM : show.BTsummary: no visible binding for global variable 'Boot.keep' fit4NM : show.BTsummary: no visible binding for global variable 'N.eta' fit4NM : show.BTsummary: no visible binding for global variable 'N.theta' fit4NM : show.BTsummary: no visible binding for global variable 'N.eps' fit4NM : Boot.try: no visible binding for global variable 'D.data' fit4NM : Boot.try: no visible binding for global variable 'ID.id' fit4NM : Boot.try: no visible binding for global variable 'B' fit4NM : Boot.try: no visible binding for '<<-' assignment to 'Boot.keep' fit4NM : Boot.try : BootPlot: no visible binding for global variable 'N.theta' fit4NM : Boot.try : BootPlot: no visible binding for global variable 'THETA' fit4NM : Boot.try : BootPlot: no visible binding for global variable 'N.eta' fit4NM : Boot.try : BootPlot: no visible binding for global variable 'OMEGA' fit4NM : Boot.try : BootPlot: no visible binding for global variable 'N.eps' fit4NM : Boot.try : BootPlot: no visible binding for global variable 'SIGMA' fit4NM : Boot.B.init : setB: no visible binding for '<<-' assignment to 'B' fit4NM : Boot: no visible binding for global variable 'Boot.CTL' fit4NM : VPC.try: no visible binding for global variable 'Current.CTL' fit4NM : VPC.try: no visible binding for global variable 'VPC.N' fit4NM : VPC.try: no visible binding for global variable 'Var.Name' fit4NM : VPC.try: no visible binding for '<<-' assignment to 'Quantile.keep' fit4NM : VPC.try: no visible binding for global variable 'TIME.id' fit4NM : VPC.try: no visible binding for global variable 'Var.Prop.Keep' fit4NM : VPC.try: no visible binding for global variable 'DV.id' fit4NM : VPC.N.init : set.VPCN: no visible binding for '<<-' assignment to 'VPC.N' fit4NM: no visible binding for '<<-' assignment to 'RunID' fit4NM: no visible binding for '<<-' assignment to 'Cur.Run' fit4NM: no visible binding for '<<-' assignment to 'INTER.flag' fit4NM: no visible binding for '<<-' assignment to 'FO.flag' fit4NM: no visible binding for '<<-' assignment to 'FOCE.flag' fit4NM: no visible binding for '<<-' assignment to 'POSTHOC.flag' fit4NM: no visible binding for '<<-' assignment to 'Current.CTL' fit4NM: no visible binding for '<<-' assignment to 'NONMEM.win' fit4NM : : no visible binding for global variable 'NONMEM.win' fit4NM: no visible binding for global variable 'NONMEM.win' fit4NM: no visible binding for '<<-' assignment to 'run.table' Found possibly global 'T' or 'F' in the following function: fit4NM * checking Rd files ... OK * checking Rd files against version 2 parser ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking examples ... OK * checking PDF version of manual ... OK