* using log directory 'd:/Rcompile/CRANpkg/local/2.9/gRapHD.Rcheck' * using R version 2.9.2 Patched (2009-09-02 r49531) * using session charset: ISO8859-1 * checking for file 'gRapHD/DESCRIPTION' ... OK * this is package 'gRapHD' version '0.1.5' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'gRapHD' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Error in library.dynam(lib, package, package.lib) : shared library 'BioC_graph' not found * checking Rd files ... OK * checking Rd files against version 2 parser ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * checking examples ... ERROR Running examples in 'gRapHD-Ex.R' failed. The error most likely occurred in: > ### * convertClass > > flush(stderr()); flush(stdout()) > > ### Name: convertClass > ### Title: Convert object between classes > ### Aliases: convertClass > ### Keywords: graphs > > ### ** Examples > > # convertion from gRapHD to graphNEL > edges <- matrix(c(1,2,1,3,1,4),,2,byrow=TRUE) > g <- as.gRapHD(edges) > #List of 9 > # $ edges : num [1:3, 1:2] 1 1 1 2 3 4 > # $ p : int 4 > # $ stat.user: chr "LR" > # $ statSeq : num [1:3] NA NA NA > # $ varType : int [1:4] 0 0 0 0 > # $ numCat : int [1:4] 0 0 0 0 > # $ homog : logi TRUE > # $ numP : num [1:3] NA NA NA > # $ userDef : num [1:2] 1 3 > # - attr(*, "class")= chr "gRapHD" > g1 <- convertClass(g) Loading required package: graph Error in library.dynam(lib, package, package.lib) : shared library 'BioC_graph' not found Error in getClass(Class, where = topenv(parent.frame())) : "graphNEL" is not a defined class Calls: convertClass -> new -> getClass Execution halted