* using log directory 'd:/Rcompile/CRANpkg/local/2.9/gclus.Rcheck' * using R version 2.9.2 (2009-08-24) * using session charset: ISO8859-1 * checking for file 'gclus/DESCRIPTION' ... OK * this is package 'gclus' version '1.2' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'gclus' can be installed ... WARNING Found the following significant warnings: Warning: unmatched right brace in file 'hclust.Rd' on line 83 Warning: unmatched right brace in file 'hclust.Rd' on line 83 Warning: invalid whitespace before brace in file 'utilities.Rd' at ' \item{m} {is a matrix.}' Warning: invalid whitespace before brace in file 'utilities.Rd' at ' \item{m} {is a matrix.}' See 'd:/Rcompile/CRANpkg/local/2.9/gclus.Rcheck/00install.out' for details. * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... WARNING 'library' or 'require' calls not declared from: cluster See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ac: no visible global function definition for 'agnes' sil: no visible global function definition for 'silhouette' * checking Rd files ... WARNING Rd files with unknown sections: body.Rd: reference wine.Rd: reference See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking Rd files against version 2 parser ... WARNING *** error on file ./man/body.Rd Error in parse_Rd("./man/body.Rd", encoding = "unknown") : ./man/body.Rd:69:1: unexpected UNKNOWN 68: } 69: \reference ^ *** error on file ./man/hclust.Rd Error in parse_Rd("./man/hclust.Rd", encoding = "unknown") : ./man/hclust.Rd:83:1: unexpected '}' 82: 83: } ^ Warning in parse_Rd("./man/utilities.Rd", encoding = "unknown") : bad markup (extra space?) at utilities.Rd:43:10 Warning: ./man/utilities.Rd:43: Unnecessary braces at '{is a matrix.}' *** error on file ./man/wine.Rd Error in parse_Rd("./man/wine.Rd", encoding = "unknown") : ./man/wine.Rd:39:1: unexpected UNKNOWN 38: } 39: \reference ^ problems found in 'body.Rd', 'hclust.Rd', 'wine.Rd' * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'reorder.hclust': reorder.hclust The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking data for non-ASCII characters ... OK * checking examples ... OK * checking PDF version of manual ... OK