* using log directory 'd:/Rcompile/CRANpkg/local/2.9/hddplot.Rcheck' * using R version 2.9.2 Patched (2009-09-02 r49531) * using session charset: ISO8859-1 * checking for file 'hddplot/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'hddplot' version '0.52' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'hddplot' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE accTrainTest: no visible binding for global variable 'Golub.BM' accTrainTest: no visible binding for global variable 'cancer.BM' accTrainTest: no visible binding for global variable 'gp.id' aovFbyrow: no visible binding for global variable 'Golub' aovFbyrow: no visible binding for global variable 'golub.info' cvdisc: no visible binding for global variable 'GolubB' cvdisc: no visible binding for global variable 'tissue.mfB' cvscores: no visible binding for global variable 'BMonly.cv' cvscores: no visible binding for global variable 'Golub.PBf' defectiveCVdisc: no visible binding for global variable 'GolubB' defectiveCVdisc: no visible binding for global variable 'tissue.mfB' plotTrainTest: no visible binding for global variable 'Golub.BM' plotTrainTest: no visible binding for global variable 'cancer.BM' scoreplot: no visible binding for global variable 'miniG.scores' * checking Rd files ... OK * checking Rd files against version 2 parser ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking examples ... OK * checking PDF version of manual ... OK