* using log directory 'd:/Rcompile/CRANpkg/local/2.9/r4ss.Rcheck' * using R version 2.9.2 Patched (2009-09-02 r49531) * using session charset: ISO8859-1 * checking for file 'r4ss/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'r4ss' version '1.04' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'r4ss' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE SSv3_plotpars: no visible binding for global variable '.SavedPlots' SSv3_plots : matchfun2: no visible binding for global variable 'rawrep' SSv3_plots: no visible binding for global variable '.SavedPlots' SSv3_plots: no visible binding for global variable 'maxyr' SSv3_plots : SSv3_plot_comps: multiple local function definitions for 'tempfun' with different formal arguments SSv3_plots: multiple local function definitions for 'tempfun' with different formal arguments sel.line : sel: no visible binding for global variable 'nlength' Found possibly global 'T' or 'F' in the following functions: DoProjectPlots SS_changepars SS_fitbiasramp SS_parlines SS_profile SS_recdevs SS_splitdat SSv3_output SSv3_plotpars SSv3_plots movepars update_r4ss_files * checking Rd files ... OK * checking Rd files against version 2 parser ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * checking PDF version of manual ... OK