plot.dlcross {dlmap} | R Documentation |
If the type of cross is not "other", will plot the genetic map for the cross. Will also plot a histogram or barplot of the first few phenotypic variables.
## S3 method for class 'dlcross': plot(x, chr, pheno.col, ...)
x |
object of class dlcross |
chr |
character string naming the subset of chromosomes to plot; or, if numeric, a vector of chromosome indices |
pheno.col |
vector of phenotypes for which to show barplot/histogram |
... |
arguments passed to "plot" to set up the plot region. Arguments may also be passed to "text" for the manipulation of the marker names |
Will only plot a maximum of three phenotypic variables; pheno.col can be used to select which are plotted.
Emma Huang and Andrew George; Julian Taylor
Huang, BE and George, AW. 2009. Look before you leap: A new approach to QTL mapping. TAG 119:899-911
# load dataset data(BSdat) dl.in1 <- dlcross(format="rqtl", genobj=BSdat, idname="ID", fixpos=1) plot(dl.in1)