plot.dlcross {dlmap}R Documentation

Plot diagnostics summarizing data

Description

If the type of cross is not "other", will plot the genetic map for the cross. Will also plot a histogram or barplot of the first few phenotypic variables.

Usage

## S3 method for class 'dlcross':
plot(x, chr, pheno.col, ...)

Arguments

x object of class dlcross
chr character string naming the subset of chromosomes to plot; or, if numeric, a vector of chromosome indices
pheno.col vector of phenotypes for which to show barplot/histogram
... arguments passed to "plot" to set up the plot region. Arguments may also be passed to "text" for the manipulation of the marker names

Details

Will only plot a maximum of three phenotypic variables; pheno.col can be used to select which are plotted.

Author(s)

Emma Huang and Andrew George; Julian Taylor

References

Huang, BE and George, AW. 2009. Look before you leap: A new approach to QTL mapping. TAG 119:899-911

See Also

plot.cross

Examples

# load dataset
data(BSdat)

dl.in1 <- dlcross(format="rqtl", genobj=BSdat, idname="ID", fixpos=1)
plot(dl.in1)

[Package dlmap version 1.06 Index]