methods for analyzing introgression between divergent lineages

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Documentation for package ‘introgress’ version 1.2.2

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introgress-package introgress
AdmixDataSim1 Admixed Population Genotype Data from Simulation 1
AdmixDataSim2 Admixed Population Genotype Data from Simulation 2
AdmixDom Admixed Population Dominant Genotype Data from Simulation 1
calc.intersp.het Calculate Interspecific Heterozygosity
clines.plot Clines Plot
compare.clines Compare Clines
composite.clines Composite Clines Plot
delta Delta
est.h Estimate Hybrid Index
fit.c.clines Fit Co-dominant Clines
fit.invariant.clines Fit Invariant Clines
fixup.combos.touse Fix Combos To Use
genomic.clines Genomic Clines
h.func Hybrid Index Function
like.h Likelihood Hybrid Index
LociD Dominant Marker Information for Simulation 1
LociDataSim1 Marker Information for Simulation 1
LociDataSim2 Marker Information for Simulation 2
mk.image Make Image
p1D Parental Population 1 Dominant Genotype Data from Simulation 1
p1DataSim2 Parental Population 1 Dominant Genotype Data from Simulation 2
p2D Parental Population 2 Dominant Genotype Data from Simulation 1
p2DataSim2 Parental Population 2 Genotype Data from Simulation 2
per.locus.like Per Locus Likelihood
prepare.data Prepare Data
s.wrapper Sign Wrapper
support.limit Support Limit
test.combinations Test Combinations
test.data.objects Test Data Objects
test.genotypes Test Genotypes
triangle.plot Triangle Plot