summary.hansenBatch {maticce} | R Documentation |
summary.hansenBatch
is a summary method for a hansenBatch
object.
print.hansenSummary
is a print method for a hansenSummary
object.
## S3 method for class 'hansenBatch': summary(object, ...) ## S3 method for class 'hansenSummary': print(x, ...)
object |
Output from runBatchHansen .
|
x |
Output from summary.hansenBatch .
|
... |
Additional arguments to print or summary .
|
summary.hansenBatch
averages parameters over models and over trees, and provides the cumulative
information-criterion weight for models containing each node as an estimate of the support for the hypothesis
that there was a character shift at that node.
print.hansenSummary
provides an easy-to-read synopsis of the analysis summary. Called automatically when you simply type
in the name of the summary object.
For summary.hansenBatch
, a list of class hansenSummary
with the following items:
modelsMatrix |
A list of matrices, indexed by tree, providing the information criterion weights for each model. |
nodeWeightsMatrix |
A list of length two with two matrices:
|
modelAvgAlpha |
The model-averaged estimate of alpha , the rate of evolution toward the equilibrium / optimum
|
modelAvgSigmaSq |
The model-averaged estimate of sigma.squared , the variance or rate of stochastic evolution.
|
thetaMatrix |
A matrix with trees as the rows, branch number as the columns, containing the model-averaged value of theta
(the character equilibrium or optimum value) for each branch on each tree
|
Andrew Hipp ahipp@mortonarb.org
carex
for an example