isMonophyletic {maticce} | R Documentation |
Test whether a set of taxa is monophyletic on an ouch-style tree
Description
A somewhat clunky monophyly-checker for an ouchtree
object
Usage
isMonophyletic(tree, taxa)
nodeDescendents(tree, startNode)
mrcaOUCH(cladeVector, tree)
Arguments
tree |
An ouchtree object.
|
taxa |
A vector of taxon names.
|
startNode |
The node of interest; nomenclature follows tree@nodes .
|
cladeVector |
A vector of tip labels.
|
Value
isMonophyletic |
Boolean, TRUE if taxa form a monophyletic group, FALSE if not.
|
mrcaOUCH |
A single node label; one of the items in tree@nodes .
|
nodeDescendents |
A vector of tip labels.
|
Author(s)
Andrew Hipp ahipp@mortonarb.org
[Package
maticce version 0.9-2
Index]