subtree {phybase}R Documentation

Subtree

Description

The function returns the subtree under the node inode

Usage

subtree(inode, name, nodematrix)

Arguments

inode the root node of the subtree
name the species names
nodematrix the tree node matrix

Value

The function returns the tree string of the subtree.

Author(s)

Liang Liu lliu@harvard.edu

See Also

del.node

Examples

treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00707):0.00929,O:0.01635):0.1,W:0.12);"
nodematrix<-read.tree.nodes(treestr)$nodes
spname<-read.tree.nodes(treestr)$names
subtree(7,spname,nodematrix)

[Package phybase version 1.1 Index]