subtree {phybase} | R Documentation |
The function returns the subtree under the node inode
subtree(inode, name, nodematrix)
inode |
the root node of the subtree |
name |
the species names |
nodematrix |
the tree node matrix |
The function returns the tree string of the subtree.
Liang Liu lliu@harvard.edu
treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00707):0.00929,O:0.01635):0.1,W:0.12);" nodematrix<-read.tree.nodes(treestr)$nodes spname<-read.tree.nodes(treestr)$names subtree(7,spname,nodematrix)