dumpData {polySegratioMM} | R Documentation |
Given segregation ratio data provided as an object of class
segRatio
, data are dumped in R format for use by JAGS
dumpData(seg.ratio, model, stem = "test", fix.one = TRUE, data.file = paste(stem, "-data.R", sep = ""))
seg.ratio |
Object of class segRatio contains the
segregation ratios for dominant markers and other information
such as the number of dominant markers per individual |
model |
Object of class modelSegratioMM containing
mixture model information |
stem |
File name stem for data file (default “test”) |
fix.one |
Logical to fix the dosage of the observation closest to
the centre of each component on the logit scale. This can greatly
assist with convergence (Default: TRUE ) |
data.file |
Data file name which is automatically generated from
stem if not specified |
None.
Peter Baker p.baker1@uq.edu.au
## simulate small autooctaploid data set a1 <- sim.autoMarkers(8,c(0.7,0.2,0.1),n.markers=100,n.individuals=50) ## compute segregation ratios sr <- segregationRatios(a1$markers) ## set up model for 3 components of autooctoploid x <- setModel(3,8) dumpData(sr, x)