R code for Stock Synthesis


[Package List] [Top]

Documentation for package ‘r4ss’ version 1.04

User Guides and Package Vignettes

Read overview or browse directory.

Help Pages

r4ss-package R tools for Stock Synthesis
DoProjectPlots Make plots from Rebuilder program
movepars A function to visual parameterization of movement in Stock Synthesis
r4ss R tools for Stock Synthesis
sel.line a function for drawing selecitivity curves
selfit A function to visual parameterization of double normal and double logistic selectivity in Stock Synthesis
SSv3_FishGraph A function for converting Stock Synthesis output to the format used by FishGraph
SSv3_output A function to create a list object for the output from Stock Synthesis
SSv3_plotpars Plot distributions of priors, posteriors, and estimates.
SSv3_plots function to plot many quantities related to output from Stock Synthesis
SS_changepars Change parameters in the control file.
SS_fitbiasramp Estimate bias adjustment for recruitment deviates
SS_parlines Get parameter lines from Stock Synthesis control file
SS_profile Run a likelihood profile in Stock Synthesis.
SS_recdevs Insert a vector of recruitment deviations into the control file.
SS_splitdat Split apart bootstrap data to make input file.
update_r4ss_files Updates r4ss files to newest versions on web.