SS_profile {r4ss}R Documentation

Run a likelihood profile in Stock Synthesis.

Description

Iteratively changes the control file using SS_changepars.

Usage

SS_profile(dir = "C:/myfiles/mymodels/myrun/",
masterctlfile = "control.ss_new", newctlfile = "control_modified.ss",
linenum = NULL, string = NULL, profilevec = NULL,
command = "SS3 -nox", model = "ss3", systemcmd = F, saveoutput = T, verbose = T)

Arguments

dir Directory where input files and executable are located.
masterctlfile Source control file. Default = "control.ss_new"
newctlfile Destination for new control files (must match entry in starter file). Default = "control_modified.ss".
linenum Optional line number of parameter to be changed. Default = NULL.
string Optional string partially matching name of parameter to be changed. Default = NULL.
profilevec Vector of values to profile over. Default = NULL.
command Call to executable. Default = "SS3 -nox".
model Name of executable. Default = "ss3".
systemcmd Should R call SS using "system" function intead of "shell". This may be required when running R in Emacs. Default = F.
saveoutput Copy output .SSO files to unique names. Default = T.
verbose Controls amount of info output to command line. Default = T.

Author(s)

Ian Taylor

See Also

SS_changepars, SS_parlines


[Package r4ss version 1.04 Index]