Liver.Muscle {sdef}R Documentation

Diabetes susceptibility in liver and skeletal muscle of mice.

Description

This dataset contains two lists of p-values obtained from a publicly available experiment to evaluate differential expression between diabetes susceptibility in liver and skeletal muscle of obese and normal mice.

Usage

data(Liver.Muscle)

Format

The format is: a matrix with 2912 rows and two columns. For each gene (row) it reports the p-values of being differentially expressed between obese and normal mice for the two tissues (columns).

Source

http://www.ncbi.nlm.nih.gov/geo, accession number GDS1443

References

Lan H, Rabaglia ME, Stoehr JP, Nadler ST et al. Gene expression profiles of non diabetic and diabetic obese mice suggest a role of hepatic lipogenic capacity in diabetes susceptibility. Diabetes 2003 Mar;52(3):688-700.

Examples

data(Liver.Muscle)
Tq<- ratio(data=Liver.Muscle)

Rq<- baymod(iter=100,output.ratio=Tq)

MC<- Tmc(iter=100,output.ratio=Tq)

#The gene names are can be obtained using the command dimnames:
feat.names = dimnames(Liver.Muscle)[[1]]
feat.lists <- extractFeatures.R(output.ratio=Tq,output.bay=Rq,feat.names=feat.names,q=NULL)
feat.lists.T <- extractFeatures.T(output.ratio=Tq,feat.names=feat.names)

output.table <- createTable(output.ratio=Tq,output.bay=Rq)


[Package sdef version 1.3 Index]