Robust Selection of Cluster Number K


[Up] [Top]

Documentation for package ‘COMMUNAL’ version 1.1.0

Help Pages

COMMUNAL-package COmbined Mapping of Multiple clUsteriNg ALgorithms
BRCA.100 Breast Cancer gene expression data.
BRCA.results TCGA Breast Cancer subset 'clusterRange' output
clusterKeys Rekey cluster assignments.
clusterRange Run COMMUNAL over a range of data subsets
COMMUNAL Run clustering algorithms and evaluate validation metrics.
COMMUNAL-class Class '"COMMUNAL"'
examineCounts Examine algorithm cluster agreement
getGoodAlgs Choose Optimal Clustering Algorithms
getNonCorrNonMonoMeasures Measure cluster monotonicty within the output from clusterRange.
measuresCorr Measure cluster monotonicty within the output from clusterRange.
monotoneClusterRange Measure cluster monotonicty within the output from clusterRange.
plotRange3D Visualize cluster stability
returnCore Assign points to core clusters
testAlgsMinSize Choose Optimal Clustering Algorithms