Spatial Analysis of Phenotypic, Genotypic and Environmental Data


[Up] [Top]

Documentation for package ‘EcoGenetics’ version 1.2.0-2

Help Pages

EcoGenetics-package Spatial Analysis of Phenotypic, Genotypic and Environmental Data
aue.image2df Transforming a raster into a data frame with cartesian coordinates
aue.rescale Scaling a data frame or matrix to 0 - 1 range
aue.sort Ordering the content of cells in a matrix. Ordering alleles in a genetic matrix.
coordinates Coordinates
eco Eco
eco.2geneland Creating input data for Geneland with an ecogen object
eco.2genepop Exporting an ecogen genetic data frame into Genepop format
eco.2gstudio Converting a diploid ecogen genetic data frame into a gstudio object
eco.2hierfstat Converting an ecogen genetic data frame into a hierfstat data frame
eco.2spagedi Exporting an ecogen genetic data frame into SPAGeDI format
eco.alfreq Allelic frequency histograms for an ecogen genetic data frame
eco.association Chi-square and Fisher's exact test for association of loci and alleles with a factor
eco.cbind Combining the columns of ecogen object
eco.clear Clearing the working environment, maintaining only the specified objects
eco.convert Conversion utility for genetic data
eco.cormantel Mantel and partial Mantel correlograms
eco.correlog Moran's I, Geary's C and bivariate Moran's I correlograms
eco.detrend Detrending spatial data with polynomial interpolation
eco.forestplot Forestplot graphs
eco.forestplot-method Forestplot graphs
eco.format Format tool for genetic data
eco.genepop2df Importing a Genepop file
eco.gsa Global spatial analysis
eco.kin.loiselle Obtention of the multilocus Loiselle's Fij matrix
eco.lagweight Obtention of a list of spatial weights for classes defined by inter-individual distances or nearest-neighbors
eco.lmtree Fitting Multiple Linear Regression models by stepwise AIC selection and Multiple Classification and Regression Trees via party
eco.lsa Local spatial analysis
eco.malecot Global and local kinship analyses (beta version)
eco.mantel Mantel and partial Mantel tests
eco.merge Merging two ecogen objects. Ordering the rows of an ecogen object according to the rows of another
eco.NDVI Generating atmospherically corrected NDVI and MSAVI2 images for temporal series of Landsat 5 and 7
eco.NDVI.post Postprocessing for NDVI and MSAVI 2 temporal series of Landsat 5 and 7
eco.order Ordering the rows of the data frames contained in an ecogen object
eco.pairtest Kruskall - Wallis + Wilcoxon (Mann-Whitney U) and aov + Tukey-HSD tests for an ecogen object
eco.post.geneland Log posterior probability plot for Geneland repetitions with fixed K
eco.rankplot Rankplot graphs
eco.rankplot-method Rankplot graphs
eco.rbind Combining the rows of two ecogen objects
eco.remove Creating an updated ecogen object by removing results of the slot OUT
eco.subset Subsetting an ecogen object by group
eco.theilsen Theil-sen regression for a raster time series
eco.variogram Empirical variogram
eco.weight Spatial weights
eco2 Eco2
eco3 Eco3
ecogen Creating a new ecogen object
EcoGenetics Spatial Analysis of Phenotypic, Genotypic and Environmental Data
environment environment
genotype genotype
int.loc2al INTERNAL CONVERSION TOOLS FOR GENETIC DATA
phenotype phenotype
structure structure
summary-method Summary for eco.lmtree output
tab tab