NAM-package |
Nested Association Mapping Analysis |
.Random.seed |
Internal functions |
calcSize |
Internal functions |
chr |
Tetra-seed Pods |
cleanREP |
Genotype Duplicates |
covar |
Internal functions |
eigX |
Internal functions |
fam |
Tetra-seed Pods |
Fst |
Fixation Index |
funI |
Internal functions |
funX |
Internal functions |
Gdist |
Internal functions |
gen |
Tetra-seed Pods |
gibbs |
Bayesian Mixed Model |
gibbs2 |
Bayesian Mixed Model |
gs |
Internal functions |
gwas |
Empirical Bayes Genome Wide Association Mapping |
gwas2 |
Empirical Bayes Genome Wide Association Mapping |
gwasGE |
Empirical Bayes Genome Wide Association Mapping |
gwasPAR3 |
Empirical Bayes Genome Wide Association Mapping |
inputRow |
Internal functions |
KMUP |
Internal functions |
LD |
Internal functions |
markov |
Internal functions |
MCreml |
Restricted Maximum Likelihood |
ml |
Bayesian Mixed Model |
NAM |
Nested Association Mapping Analysis |
PedMat |
Internal functions |
PedMat2 |
Internal functions |
plot.fst |
Fixation Index |
plot.gibbs |
Bayesian Mixed Model |
plot.H2 |
SNP heritability |
plot.NAM |
Manhattan plot for Association Studies |
RcppExports |
Internal functions |
reference |
Changing the Reference Genotype |
reml |
Restricted Maximum Likelihood |
SAMP |
Internal functions |
SAMP2 |
Internal functions |
snpH2 |
SNP heritability |
snpQC |
SNP Quality Control |
timesMatrix |
Internal functions |
timesVec |
Internal functions |
tpod |
Tetra-seed Pods |
wgr |
Whole-genome Regression |
y |
Tetra-seed Pods |